Detailed information on CNT0002682 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P92519|M810_ARATH, E-value = 5e-33

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002682

Sequence

>CNT0002682
ATTGTGAGCAATGGCAACTGCACTTTGATTGTCACAGGATACAATAGGATGCTGAATGGAACTTTTAGTTCAGTTAAGAGTGTCTGAGTCCATGAGATTT
TTGCAGTGATCTGAGCTAAGCTACGATATTCTGCCTCAGTGCTGGATCTGGCAACAACTTGCTGCTTACAGGACCACCAAGATATGAGATGAGGGCCAAG
ATAAACTGCAGCCACAGAAGTTAATCTTCTGTCATCAACATGAGATTCCCAGTCAGCATCACAGAGAACTCTAATAAAATAGGATTGACCCAAGATAGCC
GGTCTGAGATGAAGACCATGTAAAACAGTTCCCTTTAAGTACCTTAGGATTCTTTTTACAGCAACCCAGTGAGATTCTAAGAGATTGGCCATGAATTGGC
AAACCTTGTTGACTGAATAGCTTAATTCAGGTCTAGTGATAATTAAGTATTGGAAAGCACCTATCACAGATCTGTATAGAGTGGGGTCAGAAAACAGATC
CGAGCCAATTTTGGTGAGTTTGCAGCTGGAAGCCATAGGAGATGAGATAGATTGTGCCTCTGTCATGCAAGTTTTCTGCAGC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G15860.2 SET domain protein 38 protein coding CNT0002682 175 233 CDS_UTR Trans
GLYMA09G15860.4 SET domain protein 38 protein coding CNT0002682 175 233 UTR3 Trans
GLYMA09G15860.5 SET domain protein 38 protein coding CNT0002682 175 233 CDS_UTR Trans