Detailed information on CNT0002683 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6ZDY8|SDHA_ORYSJ, E-value = 1e-35

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002683

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1542.4492.8712.3560.6850.5381.1780.8681.7592.3912.1422.1721.5152.2162.19leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY*

>peptide 2 (41 aa)
MMRWNHSLLKLVFIRILTELLRWMIYTDWFTKYEVWNGKCR*

>peptide 3 (85 aa)
MDRIHYLLMSVLFFSNCHTDPAISAASSSHHNHRNMPVRVLENTAAPSSQVSGANSGRSSCQSCSLLGVGQVLIFPCFCFRYFVC*

>peptide 4 (32 aa)
MPASPCTLLKQEKRVEVLMPVRTSQKEMMRNG*

>peptide 5 (57 aa)
MEWQVQVKKDSIKCRRCMTLMIIVLFIINAEHDLFQAILNDVRCLYLKLKIIAIKSQ*

Sequence

>CNT0002683
GCTTTAGATTTGTTTTAAAACAAAAAATGAATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTT
CTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGG
AAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGGTACTCATATTCCCGTGTTTTTGTTTTCGATATTTTGTTTGTTAGACTTTGCCAATA
GGGTTTATGAAATTCGGTTTCTTTGTTTAAGGGAACACGGAGTATCTAATACTTCTTTAAGACAACTTGATAAAATGTATTTTTTTGTTAATCAAAGAAA
TTGACTTGGAATTAGCAACTAGTACTACTACTGGCCTCTGATGATGGAAATTTATATGGGTATCTGAGGCGTAATTCATTGGGCAAATGTGGTTGAGCAC
AAATTGAATGTCAATGGCAATCGTAGATGCTTGTTTGTACATGTTATGATTCCACCTGTTGGAAGATTGATTTGTAGTCCGTAGTACCACATGGTAGTGT
GAGCTTATGATTCTTTTGCTTGAGCTTATAAATTCATTTTAAGAAGCTGAGCCCTACCAGGGATATGTGAGAAAAGGACATGATAGAGTGGATTGGAGTG
AAATGACCTTACATATCCATATAATGTCCATTTTCACTTCATCTTTGTATAACTACTTGACAATTGACATTTAGTGGGCAGGGATTTTCTTCTTTTGCCT
CCCTTACTTAGGACCTTCTAAAGGCCTGAGGGATAGAGTATGTGATGTGTAGTCAATTTTTGATCAAGTATTAGAAATCTTAGAGAATTTTATTAGAGAT
CAACTCTAATAGCCAGAAATCAGCAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAG
CAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAA
GGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAGGATACTTACTGAATT
ATTACGATGGATGATTTATACGGATTGGTTCACGAAGTATGAAGTATGGAATGGCAAGTGCAGGTGAAAAAAGATTCAATAAAGTGTCGTAGATGCATGA
CTTTGATGATAATCGTTTTATTCATCATCAATGCTGAACATGATCTATTCCAGGCAATCCTCAATGATGTACGATGTCTGTATTTAAAGCTGAAAATAAT
AGCCATAAAATCCCAATAAGTGTTCACTTTGTTGATCAACTTTGACCAGTGTACAATGTGCTAAGGGTTTATTTTCTGCACCCTAGTACTTTTAGTCTGT
TTTATATTCATTTTTATTTTTCTAACCAAAGTAGCAAATGGAAGCCAGCTGCTAAAGTGGCTTATGTGAAGTAAATTGGGGAAAATAATTGAAGCATTAT
TTTAAATTGAGTTTGTTAATCAATTCACACGTAGTTATTTAAGTTTAATCAGAAA