Detailed information on CNT0002686 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VZB2|HACD_ARATH, E-value = 2e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002686

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000000002.6652.1312.4961.5583.53200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MKNFKHATSQTAPYGKILKLPYHLLVLNESEESIQLHQLDREDHKKDILLKIIDSWTRENIT*

>peptide 2 (40 aa)
MRFWISFAIVLYMNEKFQARHISNSSLWEDFKASISFAST*

Sequence

>CNT0002686
CAGAACTTGATGGCACATTGGCTATAGTATAAGGAACTTCATCTTTGTACAAATCAATTAATGTTAATATCTGTTTGATTATGGACTTTCTCTCCTTTTT
CTTACCCCTATGACAAAGGGCTGGTGCGGTCTCCAGTAACAGCAACCTTTCCACAGATAGGTTCGAGGTTGTTCCTGGCTTGGGGTATCTTGTGCTTGTT
ACCTCCCTATCAATCAGCTGGTCTATCACCGAGTCCTCATGAGATTTTGGATCAGTTTCGCCATTGTCTTGTACATGAATGAAAAATTTCAAGCACGCCA
CATCTCAAACAGCTCCTTATGGGAAGATTTTAAAGCTTCCATATCATTTGCTAGTACTTAACGAATCAGAAGAAAGCATTCAACTTCATCAGCTTGACAG
AGAAGACCATAAGAAAGACATTTTATTGAAGATCATTGATTCCTGGACCAGAGAAAATATTACTTAGCTTCAGACCTTTCCTTTTTGTAGTATACATAGC
AGGCATATACGACCATGAAACTCAATTGGCATAATGCGCGCGTTGATGAGAAAGTGAACCAAATTACCATTAATTTGACATCTTGAACTGTTGAAGCATA
TAAATTAAATAGCAAGGTAGAAAACAATATTAGTATAGTACTGAAGGCAACCAGTGTGAGACAATCTTAAATCTGTTTTATTTTTTTAATTTTAATCTTA
AATAAGTTCC