Detailed information on CNT0002695 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P04323|POL3_DROME, E-value = 3e-65

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002695

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.392.0383.0910.1172.6771.7931.3032.0210.3670.9420.410.2490.3220.220.03leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.25

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MKVGSLSLKMEIDTPCNLMISLTKISTMDLAVYGCLIKMKCPYLLNLSTTTSTASKPFDLGSPTMKFMLISSHMALGMGKGCSNPAGEEA*

>peptide 2 (30 aa)
MAGWYKISDCPLHANPEKGLSHPSISSVDT*

>peptide 3 (37 aa)
MARVRSLGSCGQTRLLISWRRPAKKYPKIWSSALGLA*

>peptide 4 (50 aa)
MSGQKGLDIPCSSLSSSLLDNVSATLFEAPTLYTISNSYPNNFANQFCWF*

>peptide 5 (29 aa)
MKPISVFTLSTSPRVHQLPSPTLQPDSPL*

>peptide 6 (50 aa)
MEIFFEKFGIDSTGAVVTACCNWVKSSILLLVHLKFSFFNKSARGRAICP*

>peptide 7 (49 aa)
IVIVHPKIIPNNSPFLINNLVLKAETGKLCLPLRELSLPMDQHLEDFCP*

>peptide 8 (33 aa)
MVPAAPSGSCNNLEWIFYSHPLILHNRVWLIRA*

>peptide 9 (37 aa)
MEICLRPYSEINPISWLNLRDFPMHICIMSHLILCFL*

>peptide 10 (40 aa)
MDFRGSISGYLEITFSVEKETGTNQTCTGSEISFTHMVGH*

>peptide 11 (47 aa)
MWANQTSNILAQTSQEIPQDLVLRTRFGLNNQKLKFLNILLDSSSLP*

>peptide 12 (32 aa)
MKRHILIFLSFATLLLFFPRLFILVHRMVSHY*

>peptide 13 (46 aa)
MYQQLYLKLQPCTQFQTHTPTILPTNFVGSELLFFAPRGTLDSSDQ*

>peptide 14 (40 aa)
MILPCFAVNQNIIKENQDIPSKKRIKGGIHSTLESCWSIC*

>peptide 15 (32 aa)
MFTSALASFLSALEEIIALDSLGSPCMTMFCP*

>peptide 16 (29 aa)
MNASLNLSKGLTCCTSKNFSALASHPKGS*

>peptide 17 (31 aa)
MITPSFVSPLDIFNIRNGSSSPASRETWFGH*

Sequence

>CNT0002695
CATAGTTATAGTGCATCCCAAAATCATTCCTAACAATTCTCCCTTCCTCATAAACAACCTTGTCCTCAAGGCTGAAACCGGGAAACTGTGTTTGCCCCTT
CGGGAGCTTTCCTTGCCAATGGACCAGCACCTGGAAGACTTCTGTCCCTGAGAGATTGACTGTTCTAGTACCCAAAATCTGGAAAGGCTGGTAAATCTCT
GTTGTGCCCTGCAATTCTGTTGGAAGTTCAGGTTCAACTAGATGGTGCCCTGCTGCCTTCTTAAGCTGGGATACATGGAATACTGGGTGTATTCGAGCCT
ACTCTGGAAGTTGTAATTTGAAGTCTACAGCTCCCATTTGTTTTAATACCAAATAAGGTCCATAATACTTGGCTGCTAGTTTAGGATGTATCTTGGTAGG
CATGGAAATTTGCCTGAGGCCTTATTCTGAGATAAACCCAATCTCCTGGCTGAATTTGAGAGATTTTCCTATGCACATTTGCATAATGAGCCATCTGATT
TTGTGCTTTCTGTAAATGGAATTTAAGCAGCTTCAAAGCCTCATCTCTGTCCATGAGGTCTTGTGCAACAGCTTCCACTAGCGTTTCTCCAGGAACAAAC
CTAGCCAAAGAAGGTGGTGACCTCCCATAAATCACTTCAAATGGTGTGCAGCGTGCAGCCCCTTGGAAGCTGGTATTATACCAGTATTCAGCCCAAGGTA
TGAATCCTGCCTAGGATTTTGGCTGCTCGGAACAAAAACACCTGAGATAAGTCTCCAAGATTCTGTTAAGGACCTCTGTTTGTCCATCAGACTCAAGGTG
GTAGGTTGTACTCATGTTCAAAGTAGTTTCCTGTAATCTAAAAAGTTCCTACCAAAACTAACTCATGAAGGTGGGATCCTTGTCACTAAAAATGGAGATT
GACACTCCATGTAATCTGATGATTTCTTTAACAAAAATCTCAACTATGGACCTAGCAGTATATGGGTGTTTGATCAAAATGAAATGTCCATATTTACTCA
ACCTATCCACTACTACGAGCACAGCATCAAAGCCTTTTGATTTAGGAAGTCCCACAATGAAATTCATGCTGATTTCTTCCCATATGGCCTTAGGAATGGG
TAAAGGTTGTAGTAACCCTGCTGGAGAGGAAGCCTGATATTTACTCCTTTGACACACATGGCAGGCTGGTACAAAATTAGTGATTGTCCCCTTCATGCCA
ATCCAGAAAAGGGATTGAGCCATCCTTCTATAAGTTCTGTAGATACCTGAATGTCCACCTATAGGAGAAGTATGGAATTCCTGGAGGAGTTTAGGGATCC
ATGTTGAATTTGGTGATAAAACTAACCTGCCTTTATAGTATAGGGATCCAAGGTATATTGAGGATGAGAGTCAGGGTCTATTTTTAAGTCCTCTAGAATT
TTGGCTAAGACAAGATCCTTCTTAACTTCTTCATCAATTTCTGTAATGTCAGGCCAGAAAGGCCTTGATATTCCTTGCAGTTCCTTATCTTCATCCCTCC
TAGACAATGTATCAGCAACTCTATTTGAAGCTCCAACCTTGTACACAATTTCAAACTCATACCCCAACAATTTTGCCAACCAATTTTGTTGGTTCTGAGT
TGTTATTCTTTGCTCCAAGAGGTACCTTAGACTCTTCTGATCAGTAAACACAGTAAATTTCTGACCTAAGAGATAAGGCCTCCAGTGTTGAATTGCTAGA
ACTAGGGTCATCAATTCCTTTTCATAAATTGATTTAGTGAGTGTTGAATCTGCCAAAGCCTTGCTGAAATAAGCAATAGGCCTTTTTTCTTGAGTTAACA
CAGCCCCTACTCCCTTTCCCGATGCATCACATTCTATGGAAATTTTTTTTGAGAAATTTGGCATTGATAGTACAGGAGCTGTGGTGACAGCCTGCTGCAA
CTGGGTAAAGTCCTCAATACTTTTACTAGTCCACTTGAAATTTTCCTTCTTCAATAAATCAGCTAGGGGTCGAGCTATTTGTCCATAGTTGCAAATGAAT
CTTCTATAGTACTCGGTAAGTCCCAAAACTCCTCTCAAAGCTTTAAGAGTCTTGGGTAAAGGCCACCACAGAATAGCTTCAATCTTTTGGGGATCCATTG
ATACCCCATCCATAGAGATAATGTGCCCAAGGTATCCTATCTTAGTTTTTTCAAAAGTACACTTCTTCTGATTGACAAAGGAAGAGTGTTCTAATAGTCT
AGCCAACACTTGTCTCAAGTGCTTTAAATGATCCTCCCATGTTTTGCTGTAAACCAAAATATCATCAAAGAAAACCAAGACATACCTTCGAAGAAAAGGA
TTAAGGGTGGCATTCATAGCACATTGGAAAGTTGCTGGAGCATTTGTTAATCCAAATGGCATTACTAGAGATTTGTAATGTTCGAGTTCTGAAAGCTGTT
TTTGGAATGTCTGGCTCGTGCATTCTTATTTGGTGATATCCAGCCCTTAAATCTATTTTGGAGAAATACACAGCTCCACTTAGTTCATCCAACAATTCCT
CTATCACTGGAATGGGGAATTTGTCTGGTATTGTAGCTTTGTTTAGAGCCCGGTAGTCCACGCAAATCTCCAACTTCCATCCTTCTTCTTCACCAAGATA
ACTGGACTGGAATATGGGCTGTTGCTGGATCTAATGATTCCTGAAGCCAGCATCTCAGCTACCTGAGTTTCTATTTCATTTTTCTACAAGTGGGGATAAC
GATAAGGCCTTACATTAACTAGATCTGTCCTGGCTTGAATTGGCATTCGATGATCTATCCCTCTAGGTGGTGGCAACCCTTTTGGTTCATGAAAAACTGT
TGCAAATTCAGATAATACCCCTTGTAATTGTCTGGTTTGGTCTGTTGTCGGCCCTTCCTCTTCTATATTACTTTTCTCCACAACCCAGAGCTTAGACATT
ATGTTTACTTCTGCCTTGGCAAGTTTCTTAAGTGCCTTGGAAGAAATCATTGCGTTGGACAGTCTGGGATCTCCTTGTATGACCATGTTCTGTCCTTGAT
GAATGAAGGACATGCTTAGAGTCTACCAATTTGCTTTAATTTCCCCTAAAGTGGCCAGCTAGGCCACACCAAGAATCAAGTTGACTCCTCCTAAGTTAAA
CAAAAAGAAATCTCCTTCCATCATATATGGTCCCAGCTGCACCTTCAGGTTCTTGCAACAACCTTGAGTGGATTTTCTATTCTCATCCCCTAATCTTACA
TAATAGGGTTTGGTTGATTCGAGCTTGAGTCCCAATTTTTTCACCAATTGTTGGATATAAAATTGTGACTTGCTTCGCTGTCTATCAAAATCAACACTTC
TTGCCCTTGCAATTCACCTTTTAACTTCATAGCTTGAGGTTGTGTCAATCCTCCTGCTGAACATATTGAAAGATCCATCCATTGACATTTCACATCAAGA
GCTTTCTCTCTCTTTTCCTCTTGTTCGTTCTCCTCTTCCATTCTTGAAATCTCTCCATTATCATCTATTTGCTCATCCTTGGCCAAGATTAACACCCTCA
TGGTTTTTCGGGACAGCGGTGACCTGGTCCAAAAGCATTTCCACAATGATAACACCTTCTTTTGTCTCTCCTCTTGACATATTCAACATAAGGAATGGTT
CGAGTTCCCCTGCTTCTAGAGAAACTTGGTTTGGCCACTGAAGACATGAATCCTTGTGAATTCTGAGTCCCACCGTTGGACGTTTGGGCACTGTTTGCAC
CTCCAAACCCTACACGAGCTATAACTCCACCACCAACTTGGTACCTAAAACTTGCACCTGAACTTGCCCCTTGTCCCTGTGTGTTCCCATAGCTCCGCAT
TTGTTTCATTGCTTCTTCAACGTCACATGCTACCTCCATGGCTCGTGTGAGGTCCCTAGGATCATGTGGGCAAACCAGACTTCTAATATCTTGGCGCAGA
CCAGCCAAGAAATACCCCAAGATTTGGTCCTCCGCACTAGGTTTGGCTTGAACAACCAGAAGCTCAAATTCTTGAACATACTCCTCGACTCCTCCAGTTT
GCCTTAGAGAAGCTAGTCTTTCATATATTGTTCCTCTCCTGTTTCCTCCAAACCTTCTTATCAAAGCGTCTGCAAATTCTTTCCAAGATAGATTCTTGAA
TTTTAGACGCCAGTATTGAAACCAGCGTATTGCATTTCCCTCCATACTAATGAATGCTAGCCTTAACCTCTCCAAGGGTTTAACTTGCTGCACCTCAAAG
AATTTTTCAGCTCTAGCCAGCCACCCCAAAGGATCGTGACCTTCAAAAGTGGGTAATTCTACTTTCTTGACCCAAGAATGAAGAGGCACATCCTTATCTT
CCTCAGTTTCGCCACTCTCCTCCTCTTCTTCCCAAGGCTTTTCATTCTTGTTCACAGAATGGTCTCCCACTACTGAAGGTGTTTTCTTGTTCATTTGTAA
CAACAAATCTTTGATGAAACCTATATCTGTCTTCACTCTGTCAACTTCTCCCCGTGTACATCAACTGCCTTCTCCAACGCTCCAACCCGATTCTCCATTG
TGATGATGTTGTATCCAGCAAGTTGGACCAATTGGTTAGGAATCTCCTTCTGAGATTGGAATACTGAAATCCTAACAAAGAAAACTCTCTCTCTCACAGA
AGAGAAGAATACTGAAACTTCCTCTATATTGAACAAAGAACCAAGAACACAATAGAACCCAAGGTAAACAAGTTTACCCCCAAAGGACTATATAAAGGAC
TATATAAAGGAAAACATACTTCCTAACAGACCTAATAACAAATTGTAACAGATTCCTATCAAAAGCTAACTAACAAACTAATAACAAATATAACAAACTC
CTAATCAGTTAGTCAATTACAAGTGTTTGCCCCTTTATATCCTATATTGGACCCTTTCTTCCTTCTATAATAAACTTGTAGAGGTTTATCATAGTTATAA
TGCATCCCAAAATCATTCCCAACAGTTGGTCTATTGGACACTTCAAGATTTAAATAATTAAATCCAAGCACATAAAAAAAGAACCAGCAACGGGGCTTTC
TAACCCTCCCCTCAGGCTCAAGGATACCATGTTAGAATGTGAGTTTGGGCTTAACTCAATCCTACAAAATTGACTTGTAAGGTGAGGATAGATCCCGACC
ACTCTATCTTTAGCACTATCTCTAGTCAATGTGAGATTTCAACACGCCTCTCTTTGCCCACGGCTACCTGCCACAACTAAGGTGGGATAGGGGTGAATTA
AGGTGACTTTCCAACAATAATGAAATAGTTCCTTCCTTCTTATAGATAGGGTACAAAATTTACATGAATATAGTGTCTTGTGGTTGGGCTGTTTTAATGA
TGGTTTTTACATTTTCCCTTTCCCACACAATATGAAGAAGAAATGGACTTTAGAGGCTCTATATCAGGTTATTTAGAAATCACATTTTCCGTTGAGAAGG
AAACAGGTACCAATCAAACTTGCACTGGTTCTGAAATTTCATTTACCCATATGGTAGGGCATTGACAAGATTTTCTTGTATAGATGAAATGTAATGCTCG
TCCTTTTCTCACATTCATTCTCCTTGATGCTCTTCATGAAGATAAAGAAAAACACAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G35891.1 Uncharacterized protein protein coding CNT0002695 180 259 CDS Trans