Detailed information on CNT0002701 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002701

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MKVEQMHFCLLWPYLLYQRPGTSSLIVKQSVLSIIALHGLSEYKSLVIFGDAIHEY*

>peptide 2 (48 aa)
SLLVYSTINLPCASVQRVLQADVILLIRFYKTNTISGSVHCSLLGFSE*

Sequence

>CNT0002701
CTTCTTTGCTTGTGTATTCAACAATCAACTTGCCCTGTGCTTCGGTGCAGAGAGTTTTACAGGCAGATGTCATTTTACTGATTAGATTTTATAAAACCAA
TACAATATCAGGAAGTGTGCATTGTTCTCTGCTGGGATTCTCTGAGTGAAGCTGGCATAGCTGAAGTTGGACCAATTCTTGTGGATTCCCTCCTGCAGCA
TGCATACCATATGAAAGTGGAACAAATGCATTTCTGCTTGTTGTGGCCATATCTGTTGTACCAAAGACCTGGGACATCAAGCCTCATTGTTAAGCAATCT
GTGCTTTCTATTATTGCACTTCATGGCCTAAGTGAATATAAGTCTCTTGTAATTTTTGGGGATGCCATACATGAATATTAACTAATTAATCTGGGCTAAT
TTTTTGCATAGTTGTGTGTGTTCTTGGTGAATGAGATTTACCTTCTTGTAAAGTTCCACATTTTCCTGAAAGATCAGGTTCCCCTGTATGTGAAAAAGAA
AAGGCCAGTCAGTGTTATAAAATTTGATAGAGG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G02525.1 Uncharacterized protein protein coding CNT0002701 1062 383 CDS Cis
GLYMA02G38091.1 Uncharacterized protein protein coding CNT0002701 93 80 CDS Trans
GLYMA02G38091.2 Uncharacterized protein protein coding CNT0002701 93 80 CDS Trans
GLYMA09G33451.1 Uncharacterized protein protein coding CNT0002701 235 123 CDS Trans
GLYMA09G33451.1 Uncharacterized protein protein coding CNT0002701 432 200 CDS Trans