Detailed information on CNT0002717 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZUU9|AB3G_ARATH, E-value = 5e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002717

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.4646.4133.5363.6371.5492.0011.971.4720.39100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IIWLHMDLSVQLWVQLYSFMNFLFFFATLLC*

>peptide 2 (38 aa)
MDATVAIRTLEATYKSSANVVAIETMILKHTQKVYYNC*

>peptide 3 (53 aa)
YNLVAYGFKCPTLGATLFFYELPFFLCYPSLLVLVYGNWNISYNRMTMEIFIL*

Sequence

>CNT0002717
GTATAATTTGGTTGCATATGGATTTAAGTGTCCAACTTTGGGTGCAACTTTATTCTTTTATGAACTTCCTTTTTTTCTTTGCTACCCTTCTTTGTTAGTG
TTAGTGTATGGAAATTGGAATATATCATATAATAGAATGACAATGGAGATTTTTATTTTGTGAACATGGACGCTACTGTTGCTATACGCACTCTTGAAGC
AACTTATAAGTCATCAGCCAATGTAGTTGCTATTGAAACTATGATTCTTAAACATACTCAAAAGGTATATTATAATTGCTGAAATAGGCACATTATAGAA
GAGTTTAATTCATGTATTTATATTTCTTGGATTGACTGTCTTTTTCTTCCTTATTCACACATTTTATTTGTAAATGTATTTGGGCTCTATTCTCAATGTG
TCTTTTATATGCAACTAGTTGCACTTAGGGGCTTTTTACTTGGGATGTATTTGTCTAAGAAGGTAACTACTTGCTTATAACCTCCATTCCTGATATGTTG
TATTTTGTTGGTTCCGACCTCATGGTTCTCCTTATTCAGTAAACCAACCAGACTTTATAAATGTGAAACTCTCTAGACATATGATATCATCTCAAGCTAA
TAACTAAACAATTTAACCAAAAAGACGTAATACTAGGGAAAATAGTTGAAATTGAGTTATGGTATTTAAAATTCTTTTCTTAAATATTGTTATTTATAGA
ATTTGGCTCATTCATGCATAGTTTTCTACCCTGGAATTCCACTATTCTAGCATAAAATATATATGACTTCTATGAGAAGTTCAGTGGCATGTTAAAGGTT
CATCTAGTAGGACCTTGTTGGGAACAAACATGTTCTTTCACCCATATAATATATAACTAACTGAAGTCTTCATGTTAGTTTGGTTGATTAAGACTTAAGA
GCACCTTATTTTAATAGTACGAAAATGCTAATGATCTTCTAACCACATTGTATATTCTGTAGATAGTGCACTACGATTGAAGCTCACACCTACATTTGTG
TTTATGTTTTGGAATATTACCTTTATGCAGCTATAAACTAAAAACACGATTTTTCATTCCTTTTGAAGGTTATTGCCTACATCGGAGGTGTTCTCTTTCT
TGTCTTTGCCTCAATAACATTATTTGAGATTGTGCAATAGTGGTTAAAAGAAATGCAATATAATCTCCATGCAAAGGGTTCAAGAACGTAATGACCTCTA
GAGTTGTTTGATTCTGCATTC