Detailed information on CNT0002718 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006976, E-value = 2e-10 (V. vinifera)

Expression of CNT0002718

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.7080.1140.23200.4050.3390.13300.139000000.157leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.75

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMSILFLSFEASIKSLFKHPYFIFLLKFFNTCFQNL*

>peptide 2 (32 aa)
MYIHKIFMMSIHSVFLFFFLFFKNFSSIQHIE*

>peptide 3 (62 aa)
MGWLQSLISPLKKLWFQMHSTHKKRRGIYILYEDVKSCPYEDVHVLWSILVESHSSSLPLKK*

>peptide 4 (32 aa)
MDSTTYKRKKKKLICTNSCVEFNMLYTQAWLL*

>peptide 5 (57 aa)
MSHTHFTKWGGCNPSSLHSRSFGSRCIPLTRREEGYTFYMKMSNLAPMKTCTSSGQY*

>peptide 6 (38 aa)
KKMDTKRGFFFFFILFYGRENVRCKADWWSVFFFFCKG*

Sequence

>CNT0002718
AAAAAAATGGATACCAAGAGAGGCTTCTTTTTCTTTTTTATTTTATTTTATGGTCGTGAAAACGTGAGATGCAAAGCTGATTGGTGGAGTGTTTTCTTTT
TCTTCTGTAAGGGATAAGAGGTTTGAAAGGGACAATGTACCAGCAGCAACAAATGTGAATTTCATGATTGGCCTGCAAGGGAATGTAAAAATGTCCCAAA
ACATGAAAAAGCGACCTAGCAAAATCTTCACTCTTGTTTAAGCAAAAGGCTATAGAGGTTTCCTCTTTATCTCTCTTGCTCTCTTCTCTTCTCAAGTTTG
TTACACCTGCATGAGCCACACCCACTTCACCAAATGGGGTGGCTGCAATCCCTCATCTCTCCACTCAAGAAGCTTTGGTTCCAGATGCATTCCACTCACA
AGAAGAGAAGAGGGATATACATTCTATATGAAGATGTCAAATCTTGCCCCTATGAAGACGTGCACGTCCTCTGGTCAATACTAGTGGAATCACATTCTTC
TTCTTTGCCATTGAAAAAATGAGGGCTGTGCACAAAACAGAATCGATACGAAGTTCGTAATGTACATACATAAAATATTTATGATGTCCATACACAGTGT
ATTTCTTTTTTTTTTCCTTTTTTTTAAAAACTTTTCTAGCATACAACACATAGAATGATGTCCATTTTATTTTTGTCTTTTGAAGCATCCATTAAGAGCT
TATTTAAACATCCATATTTTATTTTCCTCCTTAAATTCTTTAATACCTGCTTTCAAAACCTGTAGGAAGGCGGGGACAAGCTCAGTAACAGTAAGAATAA
ATTAGCCTTTGAAAAACAAATTATTAAGTCCTCAATAAGGGTTTTTACTGGTAAGCTGTCTAATTTAAGCTGTTGTTGAAATGGTTGTTTGTTCTCCTAT
TTTCCTTGTTGAAGTTGACGCGTGAAAGCTATTTCGAATGGATAGCACAACCTACAAGAGAAAAAAAAAAAAGTTAATTTGCACAAACTCGTGTGTGGAG
TTTAATATGTTATACACACAAGCTTGGTTATTATAATATCATCTCACTT