Detailed information on CNT0002738 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2QZ37|OBGM_ORYSJ, E-value = 2e-81

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002738

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVVWINRLDGTLALELSLSAVPMVEFPFFHLK*

>peptide 2 (36 aa)
MHCFDFPTSNTGGRTIARVRKIINKCSGNIPRVYCW*

>peptide 3 (30 aa)
MCWHESAIVTGFLESLKQACCPDHPLLHEQ*

>peptide 4 (36 aa)
MGTPWTLLFNSLYTSSAPSSSVLFATIKDGRLDKPS*

>peptide 5 (31 aa)
MWRRNACPSPRFWCAPFISPGISATVIERSS*

Sequence

>CNT0002738
GTTTTTTAATTTTTCTTTAATGGGAAGTTTCTTCTAAACCAGGTCAACTGCCCTTGTTGCTCTGAAACACAACAGGCTTGACTGTTTCTTTGTGGACAAC
GAAAGATAGGTAGAGAGAGAAACACACAGGAAAGATGGGAACACCCTGGACCCTTCTCTTTAACTCTTTATACACTTCTTCTGCACCTTCCTCATCAGTC
TTATTTGCAACTATCAAGGATGGTCGTTTGGATAAACCGTCTTGATGGTACTCTAGCTCTAGAATTAAGTCTCTCAGCTGTTCCCATGGTGGAATTCCCT
TTCTTCCATTTAAAGTAGCAGCCAAGTCTACCACATAAGCAAGAACCTTTGTGCGTTCTATGTGGCGCAGAAATGCATGTCCGAGTCCACGATTTTGGTG
TGCGCCTTTTATAAGTCCAGGAATATCAGCCACAGTTATTGAGAGATCATCATAGTTTAGATTCCCCAAATTTGGCCTGAGAGTAGTGAAGGCATAGTCA
CCAACAGCAGGCTTAGCCCTTGATATAGCCCCAAGTAAAGTGCTTTTACCAGCATTAGGCATTCCCACAAAGCTCACATCAGCAATACTCTTTTGAGTTC
TAATATAAGAACAGTCTCAGAACCAGGTGAACCTGCTTGCTGAGAGGAGAGAACACTGTCAGGGTCCTGAACATTGTCCATGTGTTGGCATGAAAGTGCC
ATAGTCACAGGCTTCCTTGAATCTTTGAAACAAGCATGTTGCCCAGACCACCCTCTCCTCCACGAGCAATGACAATTTGTTGACCTTCTTCTGTTAACTC
AGCAACATTATTTCTTAACATCTGTTTCTTCATCTTGTGATGAGGAGCAGCCAGTAGAATGCATTGCTTTGACTTCCCCACTAGTAACACCGGAGGTAGA
ACCATTGCCAGGGTTAGGAAAATCATCAACAAGTGCTCCGGGAATATCCCAAGGGTCTACTGTTGGTAAAATAATATTTATTTTAGATTCTCTTAAGATT
TTGTTTTAATGAGTCAAACTAGTTTGTTATATTTGTTGTGACAACTGTAGGAATTTATCTCTTTCTTTTCCTATAAAAAAACTTATTTTTTGTGAGAGCA
AGAGCATTGGTGTTCATAAGGTTCGGGGATCCTTTCGCTGCACACGATCGGAATCAACGGGTTGTCGTATCTTGGGAGAGGAGTGCAATCAGAATTTCTT
ACCCGTGCAGTGGGGGCGTTTTCTCTCTAAGGATAGCGTTTACGCGCTTCAACCCAGGCTATATCTTTCTTCCCTTAATTTTTTTTTCTTGTGCTTATTG
TATGTTATAATGCATTATTCATGTGCTGTTAATTAAATTTAATTTGCTA

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G41081.1 Uncharacterized protein protein coding CNT0002738 1486 540 CDS Cis
GLYMA01G41081.1 Uncharacterized protein protein coding CNT0002738 2208 766 CDS Cis
GLYMA03G07181.1 Uncharacterized protein protein coding CNT0002738 757 302 CDS Trans
GLYMA07G27290.1 Uncharacterized protein protein coding CNT0002738 356 299 CDS Trans
GLYMA11G04350.1 Uncharacterized protein protein coding CNT0002738 1219 553 CDS Trans
GLYMA11G04350.1 Uncharacterized protein protein coding CNT0002738 281 151 CDS Trans