Detailed information on CNT0002743 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 3e-42

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002743

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.4191.2262.95400.4160.1310.1020.1921.0691.2830.932.0321.8431.1980.242leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQSTKLRRRKVMTKNSFLNPSKGNRLFLQKGVLKRISDEDC*

>peptide 2 (36 aa)
MASECCHHAQRRKKRSTVKMDSIWRVWTYGFGLGRT*

>peptide 3 (66 aa)
MILQVLPIPPQIARPSIMMDTSSRSEDDITHQLAMIIRHNENLKRQEKNGSPAHIISDYCFPYCVT*

>peptide 4 (42 aa)
MLSSCSEEKKEIYRENGLYLESLDIRIWAWENIKCFGLWPIV*

>peptide 5 (40 aa)
MVKISGSWLKRVMVAAVLSSRRLLLRDENKCKVQSSEEEK*

>peptide 6 (40 aa)
MKINAKYKAQKKKSDDQEQLPEPIKRKQTLSTERCSEKDK*

>peptide 7 (39 aa)
VCKFGFMLCALFLVMCELLVIGIEILHALFYKFMRFNHW*

>peptide 8 (40 aa)
MYQIEKDWTHGRQQETIVGAQKATFKMEHVVRVFVLSNSW*

Sequence

>CNT0002743
AGTTTGTAAATTTGGTTTCATGTTGTGTGCTTTGTTCTTGGTGATGTGTGAATTGTTGGTGATTGGAATAGAAATCTTGCATGCATTGTTCTATAAATTT
ATGAGGTTTAATCATTGGTAGAAAAATAATTGGGATCGAGCTATGTTGCATCAATACTCATTCTGAGTGTTGTTGTGTGTGATTAAATATTGATACCCAT
AGCTCCATTCAATTGCTTGTCTCCTTTTTCTTATGAAATTATTGTTATATTAAATTGGGAACATGTAAAATTGTGTTGGAAATTGGAATTGGAGGATTTG
GGTCATGGGAACAAGAATGGAGGTGTCATGGCCTCTGAATGTTGTCATCATGCTCAGAGGAGAAAAAAGAGATCTACCGTGAAAATGGACTCTATTTGGA
GAGTTTGGACATACGGATTTGGGCTTGGGAGAACATAAAATGTTTTGGGCTTTGGCCTATTGTTTAGTATGTACCAGATAGAAAAAGATTGGACTCATGG
GAGGCAGCAAGAAACAATTGTGGGAGCTCAAAAGGCAACATTCAAGATGGAGCATGTGGTAAGGGTTTTTGTTCTATCTAATTCATGGTAAAGATATCGG
GGAGCTGGTTGAAAAGAGTCATGGTGGCTGCAGTGCTTAGCAGCCGAAGATTACTATTAAGGGATGAAAATAAATGCAAAGTACAAAGCTCAGAAGAAGA
AAAGTGATGACCAAGAACAGCTTCCTGAACCCATCAAAAGGAAACAGACTCTTTCTACAGAAAGGTGTTCTGAAAAGGATAAGTGACGAGGACTGTTAGT
TATTGGGCTTTAATCCTAAGTATGCTCATCCTGACCGGATGATTTTACAAGTTCTTCCAATTCCTCCTCAAATCGCAAGGCCTTCTATAATGATGGACAC
ATCCTCTAGGAGTGAGGATGATATAACTCATCAACTGGCCATGATCATAAGGCACAATGAGAATCTGAAGAGACAAGAGAAGAATGGATCTCCTGCACAT
ATTATATCTGATTATTGTTTTCCATACTGTGTCACTTGAATTAGCAATGCCAACTCTTCCAACATAGGATTTCAGCTATTGAAGAAGCATGGGTGGAAAG
AAGGGACTGGTCTTGGAGTCTCTGAGCAGTGGACAAAGTGGAAGCCTTGAAGCACTACAAATTTAGCTTAGCATTTGAAAATTCTAATGAGGAAGATTAT
GTAATTGAAAAATTATTCCAATCCATTGTTGTTGGTATGCATATATATTTTATCTCTATTCTCTTGCTTGCATTTACTCTATATACAACATTATTAATGT
AACACTAGATGTTCGTGGGCTTCAAGAACACTTGCATCCAATCTGATTTTTTTTACATCTA