Detailed information on CNT0002762 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002762

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.444.2284.32145.3512.5940.2040.1590.7479.32411.858.1118.54310.9346.16744.493leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.54547.550

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPLHSADASARLTSHISVESRACCELSQGT*

>peptide 2 (48 aa)
MAWRCGSLSRSVLSAARTIPTRSSISPLSPSLRSHLLHSRRPLNTLPR*

>peptide 3 (41 aa)
MLFCSSSLIALVLFCSCIKLDCFIMLVESVFLLNIMRLSPT*

Sequence

>CNT0002762
TTTAGCTTCTTCGTCACACGCTGCCTAAACCCCTAATTGGTGGGTTCCATCTGTGCGCAGAGCAAAACCAAAAACATGGCGTGGCGCTGCGGATCTCTCT
CTCGGTCGGTGCTCTCGGCCGCGAGAACCATTCCAACTCGTTCCTCCATTTCTCCACTCTCGCCTTCCCTTCGCTCTCATCTTCTCCACTCTCGCCGCCC
CCTCAATACACTCCCTAGGTAAGGACTGTGGGAATTCTCGTGTGCACGCATTCGCTGATGCCTCTGCACAGCGCTGACGCCTCCGCTCGTCTCACTTCTC
ACATTTCCGTCGAATCGCGCGCTTGCTGCGAATTGTCTCAGGGTACTTGAATAGACTTTACAATCAGCATCAGTTGTGATTACGTTTGGCATGATGTGAA
AATGGTGGCTAATGCTTTGTAGCAGGAGGCTTGTGGAGGTTTGGTAGTGCATTTGAGAAAGATAAATATTATAAGCAGTTGTGATTATAAGTGTTTTTAT
CTTTTTTATAAAAGATAAACAAGTATATCTATTCTTCTTCTGTTAGAATCTTTTCAGGCTAATTGAACGTCATCAACATTGTTTTTCTTTGTATCAGATA
ATAATAGCAGTGTTCAAGACTTAAAGTTATGTTGAAATTAAGTGTTGTATAGGTGTTAGCTGGTAGCATGGATGCTCTTTTGTTCAAGTAGTTTAATTGC
ACTGGTTTTGTTTTGTTCTTGCATAAAATTAGACTGTTTTATAATGCTAGTTGAATCAGTGTTTCTGCTTAATATTATGAGGTTGTCTCCTACTTAAAAA
TCCATTCTACGTTAATAGTATAATAGTGTTATACCCAACCATATATCTTGGGACCCTATGCAGCATGGTTAGTG