Detailed information on CNT0002768 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002768

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MDPRYHQRDLQREVIAVCLIKQQEPLKKQDTMLFSDAAETLI*

>peptide 2 (37 aa)
MMVKLDWLVPDPDLVGVGGSEEVSGVAGRRREREEGI*

>peptide 3 (32 aa)
MCSTCTELASSPAGTMAVASITVPSNPEFELG*

>peptide 4 (41 aa)
MWGIFIQIECFNFPKGVRNGRWNRQKGTKRVRHLFPTLSIL*

Sequence

>CNT0002768
TGGCATTCAATTAGCACTTAGCACATCAGGTTAAGAAAAAGACTTCATTACTTATTTGGGTACTTAAATTAAACCAATGTGTAGTACCTGCACAGAATTG
GCCAGTTCTCCAGCAGGTACTATGGCTGTGGCTTCAATTACAGTTCCTTCCAATCCTGAATTTGAGCTTGGCTGAGGGTGGACACTGCTACAGGGAGGGC
CTTCAATAGCCAATGGACCCAAGATATCACCAAAGAGATCTGCAAAGGGAGGTCATTGCTGTGTGCTTAATAAAACAGCAGGAGCCACTAAAGAAACAGG
ACACAATGCTATTCAGTGACGCTGCAGAGACACTCATCTGAGAGTAATATCAAATTGCATAAGAGTTCAAAGGGTTATTGAAAAAGAGAAATTCCAGTGA
AATTGCAGCTAGTTAACATTTGGGTTTCACCTCAGTTTCAGTGAAAGGGCTTCGAGGTTCTTGATTTTTGAGACTTGAGAGCTAGAAGCTTGAAATGCCA
TGACGCCAAATTTTGATCGAGCCACGAGCACCTCTGATTAGTGATTACCATCGATTGTGATTTTAGCGTTGTGAAATGGGGTGAAGCGATTTCAGCATTG
TGTGAGGTGTGGTTTTCTCTGTGATGTCGCGGACTCGCGGTACATGATGGTGAAGTTGGACTGGCTCGTACCTGATCCCGACCTTGTTGGGGTTGGTGGC
AGTGAAGAGGTAAGTGGCGTCGCCGGACGAAGAAGAGAAAGGGAGGAAGGAATCTAAAAAGTGGTGTTAGGGATGTGGGGCATTTTTATCCAAATCGAAT
GTTTCAACTTTCCTAAGGGGGTGAGAAATGGGCGTTGGAACCGTCAAAAAGGGACAAAGCGGGTAAGACATTTGTTTCCTACATTATCCATATTGTGATC
TGCACCTCCCAAAAATTTTGAAAAGAGCAAAGTACCCTTAATGAGTTATGTGAGTGAGCACCTCCCTTCCCCAACCCTAGCACCTCCTTCAATCTCATTT
GTGTGCATCCCATTCTAACACCTCCTTCACCCTAGAAGCACAACGACAACCACCTCCTAAATGACCTCCTTCTCCACCTTCATGCCACCTTTTTCCCCCT
CTTCCTTTGCACGACACCACTGAATGTAAGTTTTCTCCTTTCATTTCGTTTTTCTGGTTTGTGGTGTGGTGATGGGTTTCTAGTGTGGCAAAGCTA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G08940.1 Uncharacterized protein protein coding CNT0002768 229 172 CDS Trans