Detailed information on CNT0002797 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82632|GATA9_ARATH, E-value = 9e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002797

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHRLKSKDLSICHNMILLGSCIMKPNATN*

>peptide 2 (34 aa)
MRNCVYGLIKVVKKRGKENGKHKLALLVLVDGCD*

>peptide 3 (35 aa)
MEDAGLRTWVDQMGNVHGRVDGAKALLIGSHMVHA*

>peptide 4 (39 aa)
MTTSSLPDPSILVTTSFLPDLSIPPTLCRIQKINFALGQ*

>peptide 5 (31 aa)
MFNNLSELLLDKFSLHSRLVVIRAHYLICQL*

Sequence

>CNT0002797
AATTAATTAATCATTAGTTATACCATGAAAAATAGTATTTTTATATTTTTACAATCTGTCTAATTGAGTTAATTAGTTAAGTTGAAGACTTGTATAAGAT
ATGGTTAAGTTGAAAAATAGTACTTTTTGTTGAAGTGCATGAATTAATTTATAACAACATGAATAAATATCTTAAGTAATTAAATTAAATATGGGGGCCA
GTTAGCAAAAGAGAATGAGGATGATGTAAGTAATTAAGTATCTTGTTTTTGATGATGACAAATGTTTTTTTCTTCTTTTTCTTAATTTGTAATGAGAAAT
TGTGTGTATGGCTTGATTAAAGTAGTTAAAAAAAGGGGAAAAGAAAACGGGAAGCACAAGTTAGCTTTGTTAGTTCTTGTTGATGGATGTGATTGATTGC
GTGAATGGGCTAAGTACCTATTTTGAAATGAAATGATTAGGTATTGAGACAGGAGATTTAGAAAAAAAAAATGATTTGTTTCCACATATTCTAAGAGACG
AGCCAGTGGCAAGGCTTTATGAGCTTGGGAAGTGGTTATTTGGAGAGGACATTCTTGAGTCCTGCATCCATGAGGGCAATCAATCTTATTCGTAAATGAA
TGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAATGTACATGGTCGTGTTGATGGAGCTAAAGCTTTATTGATTGGATCTCACATGGTACA
TGCATAGGCTAAAATCAAAAGATCTCTCAATATGCCACAATATGATCCTACTGGGATCTTGTATAATGAAGCCGAATGCTACAAACTGAAATGATGCTTG
CGCTGTGACATGGCCCAACTTTACCGATGTATACCCTTTTGCACCGATTGACCAAAACTAAAGCATATCTGGTATTAGGAAATGTTCAACAATTTGAGTG
AACTGTTGCTGGACAAATTCTCCTTACATAGCCGACTGGTGGTTATTCGTGCACATTATTTAATTTGCCAATTGTAGATATCCTCATTTGTGCCATTTAG
TGGAGTTTCAAGCTGAAGCTCTTGACCGATTGACAAGTGATGATCCTGGAGGAAAGGTCTATACTCTGGATATAACTTCCCTGCCTTGAATCGTATACCA
CAAGCATTGCACAGAGTATTTCGCCCAAAAGGACCGGTTCTCCATTGAGGAGTTTTTATGGCGTCACAATGACTACATCTTCTCTCCCAGATCCTAGCAT
CCTTGTGACCACATCTTTTCTCCCAGATCTTAGCATCCCTCCCACTCTGTGTCGAATTCAGAAAATCAATTTTGCACTTGGACAATGATCGAGCCGCTAT
GTTTTTTGTTTTCAAGATCTTAGTTTGAGACTTCTCAGCAGCTAAATTTGACTCGTCGTCTAGCCGCGTTAATAGAGACATATGATTAGCTTGGTTATTT
GACACATCAGTGAATGATTTCCTCTCCGTTTTATCCTTTTCAGGTTGTTCCAATCTTTCCTTTTCACTCTCCCAAGGGGTAGAAAACATGGAATCAATTG
AATCCATGCCTTCCCAATTCATCATTCCCAAACATTCTAATGAGTCCTGAGGGACACAAAGTGGGTGTTCTAGGAACCCATAATTTGCGATAACCATGGT
GTAAACAATGCTCTTATAAAGTAATACTCCTGATAGATAGATAAGGGACTAGTAACTTGTTAAAGATAATCAATATTTCATTTATATAGACACCTACGTC
CAAGTATTATTCATAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G10390.1 Uncharacterized protein protein coding CNT0002797 1676 594 CDS_UTR Cis