Detailed information on CNT0002798 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0007372, E-value = 1e-07 (V. vinifera)
CNT0043837, E-value = 4e-07 (A. thaliana)
CNT0035294, E-value = 2e-06 (P. patens)
CNT0017680, E-value = 2e-06 (Z. mays)
CNT0023383, E-value = 1e-07 (A. trichopoda)
CNT0031443, E-value = 4e-07 (O. sativa)
CNT0011121, E-value = 4e-07 (S. tuberosum)
CNT0039778, E-value = 2e-06 (S. moellendorffii)

Expression of CNT0002798

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.261.4951.14600.6661.6741.0911.2280.9121.2771.3890.8670.93600.517leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRNPAVVAGHYFMGINHSQMGSTTIIICQVL*

>peptide 2 (58 aa)
MGTKVQNLPGYYSMRDLNEESSSCGWPLFYGDKSLTNGQYYNNYLPSSVTDACSAYDKG

>peptide 3 (109 aa)
DVDKFHVTVLRRSFVCVKISYLGSLSLFKNVSLSKKKGPFFLLLIVCVLLREREREGGVAGPSRSKSPPFLQPDDDLSSFNGVATTPSLLFCLIKLLLAS
VLVTLLAFK*

Sequence

>CNT0002798
GGATGTTGACAAATTTCATGTCACTGTTCTTAGAAGGTCGTTTGTTTGTGTGAAGATTTCTTATCTGGGATCTCTCTCTCTCTTTAAAAATGTTTCTCTC
TCTAAAAAAAAAGGTCCATTCTTTCTTCTCCTTATTGTGTGTGTGTTGTTGAGAGAGAGAGAAAGAGAAGGAGGAGTGGCTGGCCCCAGCAGATCGAAAT
CTCCTCCTTTTCTTCAACCTGATGACGATCTAAGCTCCTTCAATGGTGTTGCTACTACACCCTCTTTGCTATTTTGTCTTATAAAATTGTTATTGGCTTC
AGTTCTAGTTACCCTTTTGGCCTTCAAATAGTGGGTGTCCAAAAAGATTCTGAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTTTGTTGGTGCCTT
GAATGGTGGAATCTCTGTGGGATTCTTGAGAGGAGGTGTTTAGAGGATGTGGGTCTGAGGAATGGGAACCAAAGTCCAGAATCTTCCAGGATATTACTCA
ATGAGAGATCTTAATGAGGAATCCAGCAGTTGTGGCTGGCCACTATTTTATGGGGATAAATCACTCACAAATGGGCAGTACTACAATAATTATCTGCCAA
GTTCTGTAACAGATGCATGTTCTGCATATGATAAGGGA