Detailed information on CNT0002803 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002803

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLLSPKTWKLLIANRNKFHCRGIEMTTSLENYPWDYLQLLCITKKYFMFF*

Sequence

>CNT0002803
GGCATGGGCAGCTTAAACAGAGATCCAATGTTGTGATGAGAGAGGGTGCAGCTTTTAAGGTTTTAAAGTTTAACTACTTCAGTTTGTGATGAGAGAGGGT
GCAGGGGCAGCTTGAACAGAGATCCAATGACCCGACAAAAGCATGCAAAGTAGTGACACAACCCAATACTCTAATTTTTTTATTTTCCATGGCCATTCAA
TTTTTTTGGGAAGAAAAGTGATGGAATGAAGCAATGAGCAAGGCATGGCTATATATATAAATATGTGAGGTGTGTCATGTGTTTACGTGAATGATATTAA
GAAAGAAAAGAAGAATCATTACTTAAGCTTCACTGCAATAGTCAAGACCAAGGTTAAAGATTGTTGTATAAAAGTATCATTATACCACGTGCCTTGTTAG
CTGCTGCTCTTTCAAATGATTTGGTCATACTAAGTCTGCAACTGTAAAGCCATAAATTTCAACTTCTAGCTTATGGGTGTTGAGAAAGGCATCAAATTGG
AAGGCTTGTCAGTGGTATAGATCTTTAAGGCACTTGAAGATTTGTTTACCTTTGTTGTGTGGTTTGGCAGCTTGTGATACTGATGAACACCTTACAAGGA
AGCCTCTCTAGAGTGGCTTTTTAGTTGGTGTCAGTTTCCCACATCAGGGTCTTGTGAGACCATAAGGAGCAAGGTTTTTGAACAAGAATTTCCTCCTTTA
TGTTACTAAGTCCCAAAACATGGAAACTACTGATAGCAAATAGAAATAAATTTCATTGTAGAGGAATAGAAATGACTACAAGTCTAGAAAACTATCCATG
GGATTATTTGCAGCTATTATGTATTACTAAGAAATATTTTATGTTCTTTTAACGTATATGAACTTATGCAGGGCATACTCATGTAACTAAATACTATATT
TGCAGGCCTACTAGTGAATTTCCTCATCCTCTTTCCCATGTTAAGAAACCAATTGGCTACAAAGTGAGTTCTATAGTGTCT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G32300.1 Uncharacterized protein protein coding CNT0002803 191 90 CDS Trans
GLYMA10G32300.2 Uncharacterized protein protein coding CNT0002803 191 90 CDS Trans
GLYMA20G35310.1 Uncharacterized protein protein coding CNT0002803 189 89 CDS Trans