Detailed information on CNT0002804 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FF99|AAP7_ARATH, E-value = 4e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002804

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDRQRQCHQVLGRLTKICQQFYQLVFLSSFP*

>peptide 2 (39 aa)
MSPSAWKTNQNLSAILSVGIPVKLPIILPFSASATQVLRT

>peptide 3 (29 aa)
MHEMLRYLDLKKENGVWIGKGNVTKCLED*

>peptide 4 (46 aa)
PFSWFDFLVEETLECPLFNKIQYLVSAINYFLFVLCHPLPTQFGNA*

Sequence

>CNT0002804
GGCCTTTTTCATGGTTTGATTTTCTGGTGGAGGAGACTCTAGAGTGTCCTTTGTTCAACAAAATTCAGTACCTTGTTTCAGCTATAAATTATTTTCTGTT
TGTCTTATGTCACCCTCTACCCACCCAATTTGGAAATGCATGAAATGTTAAGGTACCTGGATCTCAAGAAGGAGAATGGAGTATGGATAGGCAAAGGCAA
TGTCACCAAGTGCTTGGAAGACTAACCAAAATTTGTCAGCAATTTTATCAGTTGGTATTCCTGTCAAGCTTCCCATAATTCTTCCATTTTCTGCAAGTGC
AACCCAAGTCCTAAGAACC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G44930.4 Uncharacterized protein protein coding CNT0002804 741 322 CDS Trans
GLYMA08G44930.5 Uncharacterized protein protein coding CNT0002804 741 322 CDS Trans
GLYMA08G44930.6 Uncharacterized protein protein coding CNT0002804 741 322 CDS Trans
GLYMA17G32240.1 Uncharacterized protein protein coding CNT0002804 720 310 CDS Trans
GLYMA18G07980.1 Uncharacterized protein protein coding CNT0002804 381 317 CDS Trans
GLYMA18G08000.1 Uncharacterized protein protein coding CNT0002804 892 319 CDS Cis
GLYMA19G07580.2 Uncharacterized protein protein coding CNT0002804 770 319 CDS Trans