Detailed information on CNT0002809 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O65570|VILI4_ARATH, E-value = 3e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002809

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00001.5540.1770.4170.131.3061.9720.8841.1030.71400leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MMKIGGTFIFVPQDSMPLLTYGYGSHLALIVYSLTFKVVVFGNDKAAMLADFWEYPHFLEIKLCCYGSVI*

>peptide 2 (68 aa)
MAVSMRDLDLAFQGAGQKAGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKINFRLHFSLEHNWKKL*

>peptide 3 (54 aa)
LTFSSLVLYPSILSLNLISLPLLPFHRKFSFLRTSPVFFAIFKLVNRRILWLFP*

>peptide 4 (43 aa)
SLSLLSCFIRPFSLSISFLCLCFHFTVSSHFSVPHRYFLQYLN*

Sequence

>CNT0002809
CTCACTTTCTCTTCTCTCGTGCTTTATCCGTCCATTCTCTCTCTCAATCTCATTTCTCTGCCTCTGCTTCCATTTCACCGTAAGTTCTCATTTCTCCGTA
CCTCACCGGTATTTTTTGCAATATTTAAACTAGTTAATAGAAGAATATTATGGCTGTTTCCATGAGAGATTTGGATCTAGCTTTCCAGGGAGCTGGACAA
AAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCTGTCCCAAAGTCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCT
TAAAGATCAATTTCCGTCTTCATTTTTCTTTGGAGCACAACTGGAAAAAACTCTAAAAACCACAAGCTCTAGAAAAAGGAAGCATTTGTCAGAACCTTTA
TCTGAAGCACAACTGGATATCAATGGCTTAGCAACAAGTTCACCAAATGTTCATCAAACGCAAGTAGGAAATAAAATAAACCCCATTCCATGTTCCAAAG
GATGTTTTTTCCTCCTTTTAAGGGGGTTTACTAACCGTACAAAAAAGAAAAGAAAAAAAATGATGAAAATAGGGGGAACATTTATTTTTGTACCTCAGGA
TTCAATGCCATTACTAACATATGGATATGGCTCTCATCTTGCATTGATTGTGTATAGTTTGACATTCAAGGTGGTTGTTTTCGGCAATGATAAAGCCGCT
ATGTTGGCCGATTTTTGGGAATATCCTCATTTCCTTGAAATAAAACTTTGTTGTTATGGATCTGTGATTTGAGTAAAGAGTGGGATGGGACATCATATCT
TCCAATTGCTGCATGCACGTTGATTAACTTAATAATCTCTTACTATTATGCACGTTGTTATTACATTATTAATTTATTTTTTTATTTGATCATGTAGTAT
TTTAATGAAGTTAGACCATTAGAAGCAGAGAGATTCAAGGCGCTTCGTATCCAGTGGGCACAACATTATCTAAAAGTTAGAAATCAAACATAAGATGTTA
GGC