Detailed information on CNT0002820 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8CFQ3|AQR_MOUSE, E-value = 3e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002820

Peptides detected in this lncRNA

>peptide 1 (113 aa)
MSYSIEICRDQISLKLDDHVKLSPLYKKDGVEDDLGSNLWQVFYHKFLIHFLSCATVYPQYLINIPSLQLLRANLSKKLSVLSPEELRDFVCCKLHIQII
KFLLKIMAPILKH*

>peptide 2 (32 aa)
MIYFSHAEMTTKFHLKFGTLFPMIYLISSNYFF

Sequence

>CNT0002820
ATGAGTTACTCGATAGAAATTTGCAGAGACCAAATTTCTTTAAAGCTAGATGATCATGTTAAACTGAGCCCTCTGTACAAGAAAGATGGGGTTGAAGATG
ATTTAGGAAGTAACCTGTGGCAAGTCTTCTATCACAAGTTTCTCATTCACTTTCTGTCTTGTGCAACTGTCTATCCACAATATCTGATTAATATTCCTTC
CCTTCAACTTTTACGTGCTAATCTGTCCAAGAAATTGTCTGTTCTTTCTCCGGAGGAGTTAAGAGATTTTGTTTGCTGTAAGTTACATATACAGATAATC
AAGTTCCTCCTCAAGATCATGGCCCCTATCCTCAAGCACTAATTATTGAGACATATACTCCTCCAGATCCTGGCCCCTATCCTCAAGATCAGCCTAAACA
AAATTCAGTTCGATTTACACCCACCCAGGTTGAAGCAATCATCTCTGGCATTCAGCCTGGTCTAATTATGGTTGTGGGGCCACCTAGTACAGGAAAGACT
GATCAACAAAGTGTAATTAAGAATTAGTTTTATTATTATTATATGACATTTACCTATAGAAGACCGTAGGTACAAGTAAATTGACTTTTACCTACAGTTA
GAGATTATAGGTATAAATTAATATCTTTTACCTACACATTTCGAATAGTAGGTGTTACCTATAGTGATAGTTAAATTTTGACTATAGGTAAAAATATATC
TGTAGGTAAAGCCTATAGTGACAGACTATTAGTTGTCACTGTATACCCCCTCAAAGTTGACACAAAAAACGTCTGTAGGACAAAGTCCTTTATACATCTA
CCTACGAATTTTGAACTTCTAATGATAGATTTTGACTGTAGGTAAAAGTCATTTTCCTTGTAGTATTGAGGAATTATTTTGACTAGTATGATCTATTTTT
CACATGCTGAGATGACAACAAAGTTTCATCTCAAGTTTGGCACCTTGTTTCCCATGATATATTTAATTTCCTCAAACTATTTTTTTT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G06012.1 Uncharacterized protein protein coding CNT0002820 680 296 CDS_UTR Trans
GLYMA03G06012.2 Uncharacterized protein protein coding CNT0002820 680 296 CDS_UTR Trans