Detailed information on CNT0002821 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q12200|NPC1_YEAST, E-value = 1e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002821

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.660.3970.40600.63000.4350.3231.1640.5630.4610.53100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.3

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MLGLSGVILVMLSIIGSVGFFSVLGVKSILIIMEVIPFLVLANDSSRGRGVRFFCGAAEPT*

>peptide 2 (52 aa)
MFAYISLTLGDTLHPLSFYISSKVLSHPLYQSIFLPFYFLICNLSSLSFILY*

Sequence

>CNT0002821
GTTTACACTCATTTCTAATGCTGTGAATGGATATAATTTTGTTGAACATATGATAACTATAATGTGATTTATTTAAGACAGGCATCTGCGTTCATCGTAA
CATATCCATTAAATAATGCTATTAATGAAGAAGGTAATGGAACCAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTT
ACCGATGGTACAACCAAGAAATTTGACACTGGCTTTTTTATCTGAAAGCTCTATTGAGGAAGAATTGAAAGTACTGCAGATGCTATAACTATATTGGTTA
GCTATCTTGTGATGTTTGCTTACATATCTCTTACTTTAGGGGATACCCTCCACCCTTTGTCTTTCTATATTTCATCTAAGGTGTTGTCCCATCCACTGTA
TCAATCCATCTTTCTCCCTTTCTATTTTTTGATTTGTAATTTATCTTCCCTCTCCTTTATCCTTTATTAGTTTTACTTACGAAAATCAATTTATGATTTG
AAGCAGTTTATGTTGTGGAGATAGATTTTTATGATGTACATAAATATTTATTGGATAGTTTCAGATTGCAGGTGATGCTTGGTCTTTCAGGAGTAATTCT
TGTTATGCTGTCTATCATTGGATCAGTTGGATTTTTTAGTGTGCTTGGTGTAAAATCTATTCTGATCATCATGGAAGTTATCCCATTTCTTGTCCTAGCC
AATGACAGCAGTAGAGGACGAGGAGTGAGATTCTTTTGTGGAGCCGCCGAGCCGACGTGATGATGTTGTGATTATTTTGGGAGAGAGTTGTGTTTTGTTA
ATCAACTCTTCCATAGCTGGTTCTGTAATTCTTTTGTTGATATAAGGATGTAAATCACAAATTTATTTATATGTACGAACAAATTTACCTTTAATTTTGT