Detailed information on CNT0002826 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002826

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6131.0220.48700.0810.203000.1660.9310.2170.3160.4090.9320.471leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.7

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQFSYLDVTTNDNPIRTSENPSTIEKFTGGNNLYSILP*

>peptide 2 (47 aa)
LYFKNKMLLIQGKKFYSRESYFQEYHAWEYYSNEQICLTIVISRSIV*

>peptide 3 (31 aa)
MVLSKFNMVTIIETQGNKRSKRSITLRCEWG*

>peptide 4 (29 aa)
MTIIFPYKIFYIIEYNKEEHFSPNGPLEI*

Sequence

>CNT0002826
CTCTGTATTTTAAAAATAAGATGCTTTTAATACAAGGTAAGAAATTTTATTCTCGGGAATCATATTTCCAAGAATATCATGCTTGGGAATATTATTCTAA
TGAACAAATTTGTCTGACAATAGTCATTTCTAGGAGTATTGTGTAAAACCTTAGAGCCTCTTTGGCTCTGTTACTTTTATTAATCTCCCCCCAAAATTCT
CTATTTCTAAACCAAAAAAACGAGAGGAAGAATCATCTATTTGCTGCTATTTCTTTTATTTGAATTCAGTCAGTTAGGCCCATATATGCAGTGATAAAGT
CCTTTTTAGACACTCTTATATTCCTTTTTTCTTTTATTTCTTCCTTCTAGATTGTAATTAGATGCAATTTAGTTATTTGGATGTCACTACTAATGATAAT
CCAATTAGAACTAGTGAGAATCCAAGTACAATAGAAAAGTTCACCGGAGGGAATAATCTATATTCTATACTTCCTTAGGAATTTGAGCTAAAAGCACACG
GTACATCCTTTAGTTCCGTAATTTAATGACAATTATTTTTCCATATAAAATATTTTATATCATTGAGTATAATAAAGAGGAACATTTCTCACCCAATGGT
CCTCTCGAAATTTAATATGGTAACCATCATTGAAACCCAAGGAAATAAAAGATCTAAAAGAAGCATAACCTTGAGATGCGAATGGGGCTAACATGTGTTG
CTTTAGGATGCAAACTTCACTTTGGTTAGAGTTAAAAGATTGGCTTTGTTACCTTCTAGGCTATCATTAGTCATAACAATTAGTTCTTTCAAGCTTCAAC
TTTTTTCTACTTTTGTTTTTATTAAATTTCTGACAAAAGATTCAAGTAGGCATATCATATCATAGTAGTTATACAAAGAAGAGTTCTTTAAAATGGAAAC
AAGAAAAAATGTCACTTTTATGATGAATGTCGTTGTTAGGTGTAGTCAATAAGTTCTTTCAACTTTTTATTTTTAACTTTATTTTTATTAAATGTCTGAC
AAAGGATTGAAGCAGGTATATCATATCATAATTATACAAAGAAGAGTTCTTTAAAATGGAAAATGAGAATATAAAAAATCTATCACTTTTATGATGAATG
TTGTTGTCCGGTGTAGTTAACTATTTTTTTTGATCATTTTTCCTTCCTTGGTTTTAAGAGTACAAACAGTGTGGATGTTGTTGAAGATGTCTTAATTGAT
GGTGTCAGAACTTTGCCTCAAAACAAATTGCTTTTGGAGTTAGAAATGGTGGTAATTTGAACTTTGAAGAACTATTTGCTTTTTGGAGCCACAAATACAT
ATTGGGGGACATCTAGATTCATTCGTGGGCCAGATATGAAAATGAAGGATTAAAAACATAAAAGCTAAAGAAAATAAGCAAAAAAAAAAAGTTGAATAAG
GCCCAGCCCATTGCGCGCTCAGCGCGAAAACAAAAACAAGCACTGGCGAGAGGCACGCTAAGCGCGAATAGAAGCACCCGCACGTAGGTCCAAGTCCACT
CCAACAGTTATAAAAAAAAGAGTTAAGCCAAGGAGAAAAGACACATCAAGTCTCAGAGCACTCTAATACACACCCAAAGCCTTAAAACTATCCCTTACCA
TGTGTTTGGATGAGGGATTTAAAGATTTCTAGGAAATTCAAATACATAGCATTTTGATTGTCTTGATTTAAATTCCTTTCATTTTGTAAATATTTTGTTT
GGATGAGACAATTCAATTTCTTGTATTTTAATATCCTTGTTTGGACAAAG