Detailed information on CNT0002868 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9VWH8|KISH_DROME, E-value = 4e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021709, E-value = 1e-06 (A. trichopoda)

Expression of CNT0002868

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6396.234.3110.2584.3197.756.6726.0438.63510.76910.8888.05412.5465.1034.036leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011121314

Peptides detected in this lncRNA

>peptide 1 (111 aa)
MLLVQSNTIVCNTFLCMFGLRRIKGEGREGEVYFEPFSCLRVYEMSEENGVANIMSPLKNIPFTNFYELLKVPPQINFKHPTRGEENHYSSLHSFPLPFI
FSFQVIDHMNI*

>peptide 2 (66 aa)
MSALFNFHSFLTVILLGICACTYFKMQFPAILDQKTGYICLHLAPFVNTDCNSYIVSADVNNVSFK*

>peptide 3 (36 aa)
MYHKVLPYLCSFFNCCIFCISVFILCNRFFKLAEQT*

>peptide 4 (57 aa)
MRACTFDFIGAPEIIELAIYFFSLLKRIGVFAINPQVYYMEFEFLAYGGGSLYLRCR*

Sequence

>CNT0002868
AAAAACAATAAAACAGGTAGGAAGGGAAGGGGAAGGGATGAAGTAAAGAACAGAACTAAACACTAACTGGATCAAAACTAAAGGGTATTCTTCCGGCGAT
TGTATTGTATATTGACGCTCACAGATTTCTGGGAGCGACAGTTGCAACTTCGATTCGACTTGAAGAGAGGGAGGAAGGTGGAAATTGGCAAATTATAAGA
ATACGCTGAAATGTCAGCGCTTTTCAATTTCCATTCATTTCTAACTGTGATACTTCTGGGAATATGTGCCTGCACTTATTTCAAGATGCAGTTTCCGGCG
ATCCTTGACCAGAAAACTGGGTATATATGTCTTCATCTCGCGCCATTTGTAAATACGGATTGTAATAGTTATATAGTTTCTGCAGATGTTAACAATGTTT
CATTCAAGTAGTGTAGATGTGTAGGTCTTATTAGTTAATTTTCAATGTTGCTTTTTGTAACACTTCGATCGAATCATACCAGAATGAGAGGAATCTAGAG
ACAATGCAAGTATTAGACTGTGCAGTTGAGGATGACTTAAAATAATTAATTGGTATTACCTATACAAACAAGATGCATCTACTTTTTGGTAACTTATTAT
TTAATAACTCTACAGTTAAGCATGTTTGATTTGGAGTAGTTATGGGTTAAGTGACCTTCTGGGAAATTTCTTAGCAAGCGTGTGAGTGAGAACAAAGCAT
GCTAAAAAGTATCGTGTTGATTTAGAGGGACAATCATTGATCTTGAAAGCAGCTGAAGCAGATTGTCGAGGTCTCGGAAAGGGCTACCTACAAAGGGTTC
TAATCAACGAGAAGTTGAGTGAAGTGCCACTATATGAAATACCGTAGAGTGCGAGCCGTTGAGAAGTTGACAATTAGGGGCGTTACACTTTTGGTCCAAT
GTTGTTAGTACAGAGCAATACCATAGTATGCAATACTTTCTTATGCATGTTTGGATTGAGGAGAATAAAGGGAGAGGGAAGGGAAGGGGAAGTTTACTTT
GAACCTTTCTCTTGTTTGAGAGTTTATGAAATGAGTGAAGAAAATGGGGTTGCTAATATCATGTCACCACTCAAAAACATCCCCTTTACTAATTTTTATG
AACTTTTGAAAGTTCCCCCTCAAATTAATTTTAAACATCCAACCAGAGGGGAGGAAAATCACTATTCAAGCCTTCATTCTTTTCCCTTACCTTTCATTTT
TTCTTTTCAAGTGATTGATCATATGAACATTTGAATATTATTTGTTCAAAATTCTATGTATCATAAGGTTTTGCCCTATTTATGTTCTTTTTTTAACTGT
TGTATTTTTTGCATTAGTGTTTTCATTCTCTGTAACAGATTTTTTAAACTTGCTGAACAGACTTGATGGCATGACATATATGCTTTCCTGACAGGTTTCG
TGGTTTCTTCTGGAAGGCGGCAAGAATAGGTGAACGTTTAAGCCCGTGGGTAGCTGCGGGTTGCTTTATGATGGGCGTTTCAATAATCTTCTTCTAAGTT
TTGTTTTACTCAATAGGGCGTCCGTTCTATGCTTGACCGCAGTTTGATATGCAAAATTCAGATTTCTAAATTCAAATTATTTGCAGATCTACAAAATGAG
AGCTTGTACTTTTGATTTCATTGGAGCCCCTGAAATCATAGAGTTAGCTATCTATTTTTTTTCGTTGTTGAAACGAATTGGAGTTTTTGCCATTAATCCC
CAAGTTTATTACATGGAATTCGAATTTCTAGCTTATGGTGGGGGATCTCTCTATCTCAGATGTCGATAACATAAAAGCCCACAATTTATTAATATGATGA
CTTCGAATCCGAATTACGCTGCTAACGTTAATATTAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G13886.2 Serine/threonine-protein kinase protein coding CNT0002868 219 301 UTR5 Trans
GLYMA05G26070.2 Uncharacterized protein protein coding CNT0002868 118 128 CDS Trans