Detailed information on CNT0002878 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q948P6|FRI3_SOYBN, E-value = 2e-75

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002878

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0006.3390000000001.5912.572leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLHVSIEYANFESYLLESDTEIFVCVCVLM*

>peptide 2 (37 aa)
MSFLNPLKRSRRSSTLFPPSHKLPLLVKNTPMTTRLP*

>peptide 3 (42 aa)
FSVTSVSHPFEKVFPLTMTNIISKTQILDKILNPNTTTEHYP*

Sequence

>CNT0002878
TTCTCTGTCACCTCAGTCTCTCACCCTTTTGAAAAAGTCTTCCCTCTCACCATGACCAACATAATATCAAAGACTCAAATCCTCGACAAAATCCTAAATC
CTAACACCACCACCGAACATTACCCATAACAAGAACCACCACCACCACAGACTGATCCCCAATTCCTTGAAACCCTAAGCCTCCCCAATCATAATTCCCC
CAACCCTAACCAAGATCAAGATTCTACCATGCAAGATCCGATCCCTATCACCCTCACGACTTAGATGCATTGAACCAAACAATAGTCATTAAAGAGCGTG
AGAGTAATGATGAGCTGCAGGAAGCTTGACAAGCATTGGTTGATGTAAATATTTTCCTCTTTCTCTCTCCTCAAAGCCAACACCGACCATATACTCCCTC
TCCCCAACTTTTCTTTTTCTGGTATTATTTGCTATTCTCAGTCTCAGGGCAAAAACTTGGTTCCATGCGCTACCAAGGACTCCAACAACCACCCCTTAAC
CGATGTCATTTTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCAACCTTGTTCCCACCGTCCCACAAGCTTCCCTTGCTCGTAAAAAATACACCAATGAC
TACAAGGCTACCATAAAAGAACAAATCAGCGTGGAGTACAATGTTTCGTATGTTTATCATGTGATATTTGCCTACTTTGATAGGGATAATGTCGCGCTCA
AGGGTCTTGCCAAGGTTTTCAAGGAGTCAAGCGAAGAGGAAAGGGTGCATGCTGAGAAATTAATGGAATATCAAGTATAAATTACAGCTTTCAATCTTCG
AGAATATGTTGCATGTGTCAATTGAATATGCAAATTTTGAATCTTATCTTCTAGAAAGTGATACTGAGATTTTTGTGTGTGTGTGTGTGTTAATGTAATT
TTAAGAACAAACGAGGTGGAAAAGTGAAGTTGCAATCCATAGTGATGCCTCTTTCTGAGTTTGGCCATGAGAAAAAAGGAGATGCACTATATGGTTAGTG
TGTTTGTCATCCCTTGTTACGTTTT