Detailed information on CNT0002883 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002883

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000000000.7531.6051.9642.3841.6470.7030.284leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (31 aa)
TSFKCTFKNSLLPRELSIGNCADGLKLPLKG*

Sequence

>CNT0002883
ACAAGTTTCAAATGTACTTTTAAGAACTCATTACTACCCAGAGAACTATCTATCGGAAATTGTGCCGACGGATTAAAACTGCCATTGAAAGGATAAAACA
AAGACACCCTACATTGCTTTATATCATACCATAAAAAGAGAAGACGAAGACAAGAACTTTACTTACGGTATCTCTTGACACTCCCACTTCCATATTTGCT
CTGAAGAAAAACACAATTAAGAAGCTTAAATCAGCACTAGTTGACCCCTTAGAAATCAAAATCCCAAAACCCCATTTTTCATTCTTCACACCCCACAATG
AAAGAGAGACAAGAGAGTGAAGAATAAGTAAAGGATATACCTTGTTGTCATACAAGTGGCCTCCTTGCTCATTAGCAGCCATAACCTGAAAAATCAAGCC
ATTCAATGTTTGAAGCATGGAAATGGCAATGAGTGCCAAGATCATAGCAGCAAAGAACTTAGCCATTGTTTAACACACACACACACACACTATGATCTGA
AAACCCCTCTTGATTTGGCAGAACTTTTATCTATAAGCACAAAACAACCTTCAAATCAAGAGGGATGTTTGTGTTTGAGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G37290.1 Uncharacterized protein protein coding CNT0002883 524 286 CDS Trans
GLYMA09G37290.2 Uncharacterized protein protein coding CNT0002883 524 286 CDS_UTR Trans