Detailed information on CNT0002884 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q94B38|GPT2_ARATH, E-value = 5e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002884

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKAICSVTIFKLNCTKGVVFHSNYNIYKTGI*

>peptide 2 (33 aa)
MASMAFKTVYDKGFFYFLYTLVYQSPFVQLHGS*

>peptide 3 (32 aa)
MNHFFFSTVNSYQIKILPVNKTHIKFDSLKSR*

Sequence

>CNT0002884
AAAAACGTTTAATTGGGACTTCAAACACAAAAATATCATCTACAAAAGCCCCTTCAAACTAGTGCCTCAGCAATAGTTTAGTTCATTTATTGTACCTCTT
CGAATGGCTTCTATGGCCTTCAAAACCGTTTACGACAAAGGGTTCTTTTACTTTCTATATACACTTGTTTATCAATCACCGTTTGTCCAATTGCATGGAA
GCTAAAGTATGAACATGGAACCTCGTGACTGAAGTATAGACAGTCTCCATGAACTGATGGACTGACAGCCAGATCATCCTAGTATTACAAAATTCCAGCA
GTGACACATTACAAAATCAACTTCCTTGTCCGTGGTTGAGCATGAAGAACAGTAACAAACAAGTCCCTAGAGGAATCTTAGTTCCCCAACTCTATTGTTT
CGCCTGCAGAAATCAGTAGAACAACAAATAAGCACAAGTTCCACCCACATGGGAACTACATTCAAGGTACCATCATATAACCATAGATGCTCCTATTAGA
AGCCTCACTGTGAAGAACCAAAGCATATGCTCAAGTATTTGGTGTGGTCAACTTTGGAGGGTCCTGAAGGTAAGCCAACTTAAGTTGAAATTGACTTGGA
AAAAGGAATGAGTAAAGGCAGGTTCAATGTATGAACCAAAAGGATTAGGAGGCATTTCAAAATCAAGCTACCAATAAAACACCAATTCACCTAACTTCAG
TCAGAGTAGCATTCATCAGATGGGAGGGCAAAACATGAGGCACGCTGAATCGTTGATAACCAACTCCACCCTATGAACCACTTTTTTTTCTCCACTGTAA
ACTCTTACCAAATCAAAATTCTTCCAGTTAACAAAACCCATATAAAATTTGACAGTTTGAAGTCCAGATAGTTTAACAATGCAAAGGGTTCACCACTTTG
ATGTGCTAGTCCACATAAATGAGCATCAACAACCACCCTAAGGCCTAAACACATTCTCTCTAATGAATCCTCAAACCAATAATATGTAACAGTATGTGAT
TAATATTTCAAGTATAAATAGCATTTTTCTTTTAGCAGTAAATAATATGGCCTGCCAAAAGATCAATAAGCAATGATATACATAAAAAAATTAAAAAAAA
AATGAATAATAGAAAATACCTGTGAATACAAGAAGGTTCCAAGGATAGCAATGGCAGCACCAAGAGCATTGATGGGTTGAACTGGTGTGTGGAAGATAAT
AATGGAAGACACAATGACAGATATACGTTTCATGGTGTTTCCAATGCTAAACGTCAAGGGAGAGATCTGATCCAGAGACATGTACGACACTTGATTGTAT
AGATGATAGAATACACTTTGAGCAGCTACCCACCTGTTGTGTACAATTGTCAGCCATACATTTAGTCATAATATTGAGAAGAGCAGAAGCTCAGACTCAA
AAGATAGAGGATGAAAACAACAGACAACTCAATCAGAATTCAGAAATGAAAGCTATATGTTCAGTTACAATATTTAAACTAAACTGCACTAAAGGGGTAG
TCTTTCATTCAAATTACAACATATACAAAACAGGTATTTGATAATCAATCCATTGCCTTGCTCAGACAATCTATCAGCCTGCAAGTCTCAAATTAGCATA
ACGACATGGTATAATCTTTTTGTGGCAGAAAAGAATGAAGTTGACAATTGACATATTCTAGCCAGAATTAAAT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G28460.1 Uncharacterized protein protein coding CNT0002884 355 221 CDS Trans
GLYMA02G25290.1 Uncharacterized protein protein coding CNT0002884 1250 721 CDS Trans
GLYMA02G25290.1 Uncharacterized protein protein coding CNT0002884 454 184 CDS_UTR Trans
GLYMA02G25290.2 Uncharacterized protein protein coding CNT0002884 1250 721 CDS Trans
GLYMA02G25290.2 Uncharacterized protein protein coding CNT0002884 454 184 CDS_UTR Trans
GLYMA02G45840.1 Uncharacterized protein protein coding CNT0002884 556 280 CDS Trans
GLYMA14G02930.1 Uncharacterized protein protein coding CNT0002884 540 280 CDS Trans