Detailed information on CNT0002898 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002898

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MILLYHREMKTKLMDLIGLSQAEFCGALHCDLK

>peptide 2 (50 aa)
WLREKERRTRSQIRFLLLTKLTFTDKNKKNRPSNSLNKMIGYMFWHCTVH*

Sequence

>CNT0002898
GATGGTTAAGGGAAAAGGAAAGGAGGACAAGGTCGCAGATTCGATTCCTCCTGCTAACAAAACTAACATTTACCGATAAAAATAAAAAAAATCGACCAAG
CAATTCACTAAATAAAATGATTGGCTATATGTTTTGGCATTGTACAGTGCACTAGAATTCTCTTTATTCACAGGTTACACGTTTCCAAGCATAAGTTGAA
ATAAGCTGCAAATACTAAGCACAGCTCGACAGCAAAACTAAAGGAAAACAAAGTCACTAGCTGGAACCAGTTATGATCATTCAAAATTGGGAGGGAAATA
TTATGATATGTATAATATGCATCCCAAAATAATAAACTGCGAAACTAAACCAGTGAGCAAGACAGGCAATAGATTTTCCAAGGGAGGGGAATGATCCTGT
TATACCATAGGGAGATGAAGACAAAGCTGATGGATTTAATTGGATTGAGTCAGGCTGAGTTTTGCGGCGCCTTGCATTGTGATCTGAAAG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G36980.2 Uncharacterized protein protein coding CNT0002898 668 328 CDS Trans
GLYMA11G36980.3 Uncharacterized protein protein coding CNT0002898 668 328 CDS Trans
GLYMA11G36980.4 Uncharacterized protein protein coding CNT0002898 668 328 CDS Trans
GLYMA11G36980.5 Uncharacterized protein protein coding CNT0002898 668 328 CDS Trans