Detailed information on CNT0002899 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002899

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GCLLLCISCQAKFVAVLENANGLIICLPSAK*

>peptide 2 (52 aa)
MFTKHMLCFNYVCAIQFPMTWALYCVYAFYQMINNNGFVWINFFISTYRRRK*

Sequence

>CNT0002899
GGGGTGCTTGCTGCTGTGCATATCTTGCCAAGCTAAATTTGTAGCAGTCCTTGAAAATGCAAATGGGCTCATTATTTGCCTCCCATCTGCAAAGTAAACA
TAAATTAGATAGATGGATATAGTAGTACTCTTGTTATAAAATGAAATTCTAGTGCTATCATCACAACCGAACGTCAATACTTCATTGTCGGCACTTGAAA
GAATGCAAATGATTTTGCTTGATTTGCAGAGTGGATCACTGGTTGTTCCTGCTTGGTTTTGTCAGTAGCAATAATGTATATCTAGTGTTGAATTATCTGG
TTACAATTTTTTTCAAAAATGATTTCCAGTAAACTACAACCTAAGTAGTAGCAGTGAATAACTAAACTATGCTTTTGTTGGGTTGAGTTTTTATATGGGA
AAAGTAATTCAAAGTGGTGTTTTTACAAAATTTTGAATATCGTACTCATACGAAGATGTAAATCATGCTCTTGATCTGCCAACGCTCAGTTCTAGAAAGA
GATTAAGTAGCTGTATTCCATGTTTACCAAGCACATGCTTTGCTTCAATTATGTGTGTGCTATCCAGTTTCCTATGACTTGGGCACTCTACTGTGTCTAT
GCCTTTTACCAGATGATAAATAATAATGGTTTTGTTTGGATAAATTTCTTTATAAGCACTTATAGAAGAAGAAAATAAGAAGTTAAAATGAATTAAGTTT
TTCTCATAAATTAAAATCAACTAGAACTTTTATAGAAGCCAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G36980.2 Uncharacterized protein protein coding CNT0002899 663 321 CDS Trans
GLYMA11G36980.3 Uncharacterized protein protein coding CNT0002899 663 321 CDS Trans
GLYMA11G36980.4 Uncharacterized protein protein coding CNT0002899 663 321 CDS Trans
GLYMA11G36980.5 Uncharacterized protein protein coding CNT0002899 663 321 CDS Trans
GLYMA11G36980.6 Uncharacterized protein protein coding CNT0002899 663 321 CDS Trans