Detailed information on CNT0002903 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2PMN7|NU1C_SOYBN, E-value = 1e-164

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0003282 in V. vinifera

CNT0021886 in A. trichopoda

Most similar lncRNAs:
CNT0003282, E-value = 0.0 (V. vinifera)
CNT0040378, E-value = 6e-39 ()
CNT0021886, E-value = 0.0 (A. trichopoda)
CNT0012908, E-value = 2e-23 (S. tuberosum)

Expression of CNT0002903

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000.8970.4890.7371.8260.8110.2010.4820.08700.0821.4060leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.92

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTDIDSPILNKQISPLDGIRFSLKSNFVSSRRA*

>peptide 2 (32 aa)
MFDLFQKKSETNMYGIEIFEPPSKELLQVRKK*

Sequence

>CNT0002903
ATATATAAGGTCCACTTTTTTTTACAGTGAAAACAGTTGAGACAAAGTTGTTAATAATAGATTGCTGAGAGAAATGGGTAAAAGAAATTTCCACCCAAGA
TTTCATAATTGATCTATTCTTAGCCTAGGCAAAGTCCATCTTGTTGCGATAGAAAGGAATAAGAATAAATAAGTTTTAGCTAGTGTAATAAAGATATCAA
TTATCATTACAAAAACTCCATATGTTTGATTTATTTCAAAAAAAGTCAGAAACGAATATGTATGGAATAGAGATATTTGAACCACCAAGTAAAGAACTGT
TACAAGTAAGGAAGAAATGAATAGGTTTAAATAGGAAGCAACATAAAATAAACCAAATTTGATACCCGAGTATTCGGTTTGATAACCCGCTACTAGTTCT
TCTTCCGCTTTCGGTAAATCAAAAGGTAATCTTTCACATTCTGCTAGGGACAAGATTAGAAAAACAATGAAACCCATAGGTTGACGCCACAAATTCCATC
CCCAAAAGCCATATTTTTATTGTGCGTCAACTATATCAACTGTACTTAAACTGTTAGATAGTAGAGATATTGATAACACACATAGAGTTAATGGTATTTC
ATAACTAATCGATTGAGCAGCTTCTCGTAGACCACCCAAAAAAGAATATTTATTATTTGACCCATATCCTAACATAAGAAGTCCAATGGGAGCAATACTC
GAAATAGCAATCCATAAAAAAACACCAATATTCAGATCAGATAAAACAAAGTTATAGCCAAAAGGAATTACTTAATAGCTTATTATAATCGATATGACTG
ATATAGATAGTCCTATACTGAATAAACAAATATCTCCTCTAGATGGAATAAGATTCTCTTTGAAAAGTAATTTTGTTTCGTCTAGGAGAGCTTGAAGAAC
TCCAAAAGGACCTGTGTATTCAGGTCCAATACGTTGTTGTATCCCTGCGGATATTTCCCTTTCTAACCATACAATTGCTAGTACACTTATCGTAATTCCC
AATATAAGAATCAAAATAAGGGCAAATACCCATATAATTCCATATATCTCTTTAAAAGATTCCAATCTGAAAAAAAATGGATATCTTGTATCTCTGTTAA
ATAAATTATCATTTCAACGATCAACTTCTCCCATAATAATATCTATGCTACCTAGTATTGTCATAATATCGGCCAATTTCATTTTTTTTAACTAATTGAG
GAAGAATTTGCAAATTGATAAAACCTAGCGGATGAATTTTCCATCTCCAAGGAAAACCATTTTGATCCCCTATTAGAAAAATTCCTAATTCTCCCTTGGG
GGCTTCAATTCTTACATAAAGTTCTTGTTTTGGCAATTCAAAGCCGAAGACGGTTTTTTACTAATAAATCGATACTCAAACTCATTCCATTCTGGCTCTT
TTTCTCTATCAAAGCAGCGAATTTCTAAATTTTCATATGGTCCGTCGGG