Detailed information on CNT0002908 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004810, E-value = 7e-06 (V. vinifera)

Expression of CNT0002908

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.8473.9974.0840.9470.4131.0380.4060.3811.2731.1872.031.0080.5222.9713.363leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLLNLLSVKFCRFLKLHHLALYVCCYLPNTNEHNKRSLLKYLSHIDFPPCRA*

>peptide 2 (36 aa)
MALASSNPWRASFPILSNSALASSPNWVKYSDLSSK*

Sequence

>CNT0002908
GTAGCTCCAAGAACTGCTATTTTTTTCCAATCAGTTGATGATGAGGCAATAGAATCAACTATTGCAAAGGTGTCCTCCTTCTGAGGTTCTTAAAGAACAG
CCCTTCATTTCTTCCATCCTCCATTTGAACTTCAAATTCACCTAGTTCTTTTTCATGCTCCTGAATCTCTTGTCTGTTAAGTTCTGCAGATTCCTCAAAC
TCCACCATCTGGCTCTCTATGTTTGCTGTTATCTGCCAAACACAAATGAACACAATAAGCGGTCATTACTAAAATACCTTTCACATATCGATTTTCCTCC
ATGCCGTGCTTGATGATTGATTGGCTAGTGTGTATGGCACAAGAGACAGACTTTTACCAAACCATGGTTTGAGACTTTCCAAATGCAAAAACCAAAAATA
CACTACATTGTTAACTCAAAAGTTGAAGCATACAATGGCACTAGCTTCATCTAATCCTTGGAGGGCATCTTTTCCAATCTTGTCAAACTCGGCCTTGGCT
TCTTCACCAAACTGGGTTAAGTATTCAGATCTCTCATCAAAATAATCTGTGAGACGGACTTTCTGAGTTTGAAGCATGGCAATTTGGGCTAGCAGTTCTT
GTTTACGAATATCTCCTGGTTGGGGAGCTTGAGATTCAGATTCATTGGACTTGCAGAGGCACAAAACAGAACCTTTTGTGTTGAGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G17631.1 Uncharacterized protein protein coding CNT0002908 1260 620 CDS Trans
GLYMA18G42480.1 Uncharacterized protein protein coding CNT0002908 1742 619 CDS Cis