Detailed information on CNT0002912 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q945M9|NFYA9_ARATH, E-value = 1e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002912

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MICRLAYILPRVFTDNQGIHQICHLDTNQPRPLTPHQLWFSC*

>peptide 2 (38 aa)
MMSYVNINNRLNYTKINQSNECWHIKSLFLTILHNLLK*

>peptide 3 (32 aa)
MSLGYKPTSASNPPSIVVQLLTRTIPFLQSFT*

>peptide 4 (28 aa)
MLAYRPIEESQNVKKDSSTSRTKFCLMFR

Sequence

>CNT0002912
GTGCCATGGTCACTTCAAGGCAAACAAAGTTATGGATGAGAAAAGTTTTTCTTTTTAAATTTTGCTAACAGAATGGAAAATCAATTTTCTTAAGAACCAA
TGAAATACTAAAAACTGAAACAACAACGGGCCACAAATGATGTAATGTAACTAACAGCATGTTCATTATCCTATGATGTCTTATGTTAACATTAACAACC
GGTTGAACTACACAAAGATAAACCAGTCAAACGAGTGTTGGCACATCAAGAGTTTGTTTCTCACCATACTCCATAATCTTCTGAAGTGACCATCCTAACC
ACTATAAAACTTTACAAAATGTAAAAATGAGAAAAGAACGAAGGATTGATTGACTGACTTCAACAGAAATCTCAAATACCAATCATTCCCCCCCCCCCCC
AACCCCCCCCATAGTAATCATTAACACCACAAACACAAGAACAAAGCCAAGAATGATTTGCCGCTTGGCATATATATTGCCAAGAGTGTTTACAGATAAC
CAAGGTATTCACCAAATATGTCACTTGGATACAAACCAACCTCGGCCTCTAACCCCCCATCAATTGTGGTTCAGTTGCTGACCCGAACAATCCCTTTCCT
CCAGTCTTTCACCTGAGGATGAATGGTACACTGAAGATTGCAATCCATTATGATTATGGTAGGAGCCACTGCCATTTTGGTAACAGGGTGCTTTGAACCT
GTTGTGCACTTTTGATGCTCTTGCATCTTGTTGCCATTATCCTTTTCCTTGCCTGAGTGGTTTGAGCCCTCACCGTCAGTTTTCTTTGCAAATCGTCCTC
CAGTACCCCTTGCCCTTCTCATAGCATGCTGATGCCTAGATTCATGAAGATATGGCTGTGTACACCAGATGTTAGCATATAGGCCCATAGAGGAATCCCA
AAACGTTAAGAAAGACAGTAGTACTAGTAGAACCAAATTCTGTCTCATGTTCAGA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G45030.1 Uncharacterized protein protein coding CNT0002912 901 447 CDS_UTR Trans
GLYMA08G45030.1 Uncharacterized protein protein coding CNT0002912 530 220 CDS Trans
GLYMA18G07890.2 Uncharacterized protein protein coding CNT0002912 888 309 CDS_UTR Trans