Detailed information on CNT0002914 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CT38|TF25_SCHPO, E-value = 1e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002914

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRVRLASFFTGAAAASFLGLYTLHKDYKVPHQSFTQQIPSS*

>peptide 2 (39 aa)
MHHLLNLFFLAMRISSRFDFDLLRTLQKWNNMILTSSRW*

>peptide 3 (75 aa)
MNPAIGNKNTGTLNSYPCNVMDKLGTTPSTVIDWPKTLKQGPGSTGSLRNSAIWGCKKLSELPPSTKTCTRICPI*

>peptide 4 (54 aa)
MCPKYSISNTPNEHFDNFTNNTCCLRTRSTFSRCVKCSWSSISCTIFSICSFWL*

>peptide 5 (41 aa)
MMLEFGTLNCKCAAIGQSLGLYVVVNLSKHHPQCGTEIAEQ*

>peptide 6 (31 aa)
MVSYQCWCEMMCCTKTLPNLKPCTKLLDCEK*

>peptide 7 (62 aa)
LREKGGKWVCDESEIGVVLHRGCSGVVSGALHPPQGLQGPAPILYSTDPIIMIDIARLPHFV*

>peptide 8 (61 aa)
MLQIWLVKLLCHICGWWPLMDCLNHTTTHRYSLFWKLCVPSIQFPILQMNTLTTSQTIHVV*

Sequence

>CNT0002914
GACTGAGAGAGAAAGGGGGGAAATGGGTATGTGATGAGAGTGAGATTGGCGTCGTTCTTCACCGGGGCTGCAGCGGCGTCGTTTCTGGGGCTCTACACCC
TCCACAAGGATTACAAGGTCCCGCACCAATCCTTTACTCAACAGATCCCATCATCATGATAGACATTGCTCGTCTCCCACACTTTGTGTAAATCTTCTCA
AAAGCAAACAAAAGACAGAAAACATATATTACAAAGTAGTAACAGGGTCTGATGCCTGTGGATTGTATCGAGTCAGAGCTGGTGGATCTCTCCCATATAA
TGCTTTAAATGGTGTCATACCAATGCTGGTGTGAAATGATGTGTTGTACCAAAACTCTGCCCAATTTAAAGCCTTGTACCAAGCTTTTGGATTGTGAAAA
GTGAAATACCTGAGAAACATCTCCAAGCACTTGTTCACTACTTCTGATTGGCCATCGGATTGAGGATGGTAGGTTGAGGACATGGCCAATGTGGTACCCT
GCAATTGAAATAAGTTCTTCCAGAAATTGCTAGTAAAAACCTTATCCCTGTCAGACACTATTGACTTAGGCATTCCATGTAATTTAACCACATGAGTCAT
GAATAACTCAGCTACAAACCTGCTCGTGTAATCCCCTTTGAGTGCTATGAAATGACCATATTTTGATAAACGGTCTATTATTACCAGAATAGTATTGAAG
CCATACGAATTTGGTAGGCCAGTGATAAATCCATTGCTATATCCTCTCATATATGTGATGGTGTAGGCAGTGGCTGCAGCAGCTCAGCAGCTTTGGTATG
TAAAGTTTTTGCTTGTTGACAAATTGCACAAGATCGAACAAATTGTTGCACATCATGCTTCAAATCTGGCTAGTGAAACTGTTGTGTCACATTTGTGGGT
GGTGGCCACTCATGGATTGCCTGAACCATACTACTACCCATAGATACTCCTTGTTCTGGAAACTATGTGTCCCAAGTATTCAATTTCCAATACTCCAAAT
GAACACTTTGACAACTTCACAAACAATACATGTTGTTTAAGGACTCGTAGCACATTTTCCAGATGTGTCAAATGTTCTTGGTCTAGCATTTCATGCACCA
TCTTCTCAATTTGTTCTTTCTGGCTATGAGGATATCTTCACGGTTTGACTTTGACTTGCTGCGTACCCTCCAAAAGTGGAATAACATGATTTTGACTTCT
AGCAGGTGGTAATGATGTTGGAGTTTGGAACATTGAACTGTAAGTGTGCAGCAATAGGGCAATCTCTGGGGCTATATGTGGTGGTAAATCTTTCAAAACA
TCATCCTCAGTGTGGAACTGAAATAGCTGAACAGTAAATGAATCAGCAATAGCATCAATATTCACATCCTTCTGTAATGATTGAATTGAGCCATTTTAGG
TGATGTGCCTCTCTCCTTGTAATGTCACAAATTTTCCATTGTAGATAAATTTTAGTGTCAAAGCTGCATAGTCTGCCACATGTGGGCCTAAAGTAGCCAG
CCATGAATCCTGCCATAGGCAATAAGAATACAGGTACTCTCAACTCATATCCTTGTAATGTGATGGACAAATTAGGGACCACTCCCTCAACAGTCATAGA
TTGGCCCAAAACTTTGAAACAAGGACCTGGTTCCACCGGGAGTTTAAGAAATTCAGCAATTTGGGGTTGTAAAAAATTATCTGAACTTCCTCCATCAACC
AAGACTTGTACACGGATTTGCCCAATTTGACATGTGAATCACAAAATACCCATGCTATCGGTCCCTTTCATTGCATTCAGAGAAAGATGGTG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G29854.1 Uncharacterized protein protein coding CNT0002914 162 95 CDS Trans
GLYMA12G30890.1 Uncharacterized protein protein coding CNT0002914 172 95 CDS Trans
GLYMA12G30890.2 Uncharacterized protein protein coding CNT0002914 172 95 CDS Trans
GLYMA13G39431.1 Uncharacterized protein protein coding CNT0002914 151 95 CDS Trans
GLYMA13G39431.2 Uncharacterized protein protein coding CNT0002914 151 95 CDS Trans