Detailed information on CNT0002916 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LZR3|CSLA9_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002916

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.552.0732.3301.3551.7021.9381.592.7844.0482.4223.0062.8042.1260.86leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVVLNRRRRPISFLGQVLQRHYVIDIVCLK*

>peptide 2 (68 aa)
KSNQIYVDCRAMVKLLIIKCVRLYTLLAPMVLYQGRVTLDTLSPQSRQGSFSCGSKGVCMIMHQTTFM*

>peptide 3 (119 aa)
MFKITDINCVFLVVSRDAVGSSTYPFFDFNIWRILALNEAGGWKDRTTLEDMNLVVRANAYVDSLYIIYDKFEYLIRMKLTSTECCYCQTISHNKHDKSQ
HFLFSHLTLNIYTTLFLVL*

Sequence

>CNT0002916
AAGTCCAATCAGATATATGTAGACTGTAGAGCAATGGTGAAGTTACTAATCATTAAATGTGTTAGACTTTATACATTACTGGCACCAATGGTTCTGTATC
AGGGCAGAGTAACCCTGGATACCCTATCACCACAGTCGAGACAAGGCAGCTTTAGCTGTGGCTCAAAAGGGGTTTGTATGATAATGCATCAAACAACATT
CATGTAACTGCTCATCTTGCTATCCTGAAGAACACTTGGGTTATCACATAGGAATTCAAGCTGGGTCAAGTCCGTAGCCAGATTCAGGTTTGGAACTTAT
CCAAATTCAATTAGTTATAGTTTTTATCTTTCTTTATATTAATCCATAAAAAGTGTTTTAATTATCTGCTTTTGCTTCTTTGGTCCGTCACACGTGCTTG
CTTCTTTGGTCTTTTTGGTGAGTGAAAAAAACCAGAGTGAGAGATCTTTTGTAGATGCAACCATAGAATAAATAAACTAAACTTTTAACAAGATTCAACT
AAAAGAAAAAAAAAACAACTTTAATTTCTAAGAAGATTCTATAGATAATTACCTTAGAAAGTACTATATATTCTAAGACGGTCGTAGCACAACCGTTTTA
GAATGTAGTGCATTCTAAGTCGGTCTTGTGCTACGACCATCTTAGAATGTAGTACAATCTTAGTTGGTCTTTGAGTCTGGACCATCTAAGAATGTATAGT
ACATTCTAAGATGGTCGTGCTTAACCGTCGTCGTAGACCCATTAGTTTTCTAGGACAAGTGCTACAACGACATTACGTAATCGACATAGTATGTTTAAAA
TAACCGATATAAATTGTGTTTTTTTAGTAGTGTCAAGAGATGCAGTGGGGTCTTCCACTTACCCGTTCTTTGATTTCAACATATGGAGAATTTTGGCGTT
GAATGAGGCTGGTGGATGGAAGGATAGGACCACACTGGAAGATATGAACTTGGTGGTGCGAGCCAATGCCTATGTGGATTCATTGTATATAATATATGAT
AAATTCGAATACTTAATTAGAATGAAGTTGACAAGCACTGAATGTTGTTACTGCCAAACCATAAGCCATAACAAGCATGACAAGAGCCAACACTTTCTTT
TCTCCCATCTCACCTTGAATATCTATACTACTTTATTTTTGGTATTATGA