Detailed information on CNT0002922 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2PMU0|PSBZ_SOYBN, E-value = 2e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002922

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5520.6650.2261.2080.2630.66200.971000000.7580leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.3

Peptides detected in this lncRNA

>peptide 1 (59 aa)
AFQFAVFALIAISFILLISVPVVFASPEGWSNNKNVVFSGTSLWIGLVFLMGILNSLIS*

>peptide 2 (53 aa)
MVTVANASHLILQVQSISKHMTTCLVSFPVPVQKKNYQFPKKARSNPIKTFDQ*

Sequence

>CNT0002922
GCTTTCCAATTCGCTGTTTTTGCATTAATTGCTATTTCATTTATTTTATTGATTAGTGTACCTGTTGTATTTGCTTCTCCTGAAGGTTGGTCGAATAACA
AAAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTGTTTCTCATGGGTATTCTTAATTCTCTCATTTCTTGAAGCTCTATTTATTCTAGATA
AAAAACGAAATGACCCCTCCCCACAATTCTTTCGGATTGTCAAGCACATTAAAAGGTTGGTTTTTGAAGTGCTAACTTATCAATTACCAATACAAAACGA
GCAAATAGAAAAGATTATAATGCAATATGGTTACGGTTGCTAATGCAAGCCATTTGATTTTACAGGTACAATCAATCAGTAAACATATGACAACTTGTTT
AGTCTCATTTCCGGTTCCTGTGCAAAAAAAGAATTATCAATTCCCTAAAAAGGCAAGGAGCAACCCAATTAAAACATTTGATCAGTGAAATATTTTTAAA
AAATTTACTCACCACAACAGTAGAGCAAAATTTGTTAT