Detailed information on CNT0002940 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q00497|SK_SOLLC, E-value = 1e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002940

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.8531.7350.5060000.1450.1360.3031.5730.2631.8690.6210.8470leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.92

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLLIVYVFLFNNNYSMTIYCILNICVFIIRGVLT*

>peptide 2 (37 aa)
MHTWRYGSKIKPKRRVRFFSNCYCYGGTGTNQMLSYK*

>peptide 3 (41 aa)
MSIPHINSFLHMIIEEHYSRELGIWKISWLCKVDSLWLSIH*

>peptide 4 (42 aa)
MLSLMHKHVISIDGGVVLMPNNWKYMRRGISVWLDVPVEALA*

>peptide 5 (36 aa)
MAAKLSQRDVSDFSPTAIAMEAPEQIKCFLISEDGF*

Sequence

>CNT0002940
CCTTTATAAAGTAAATTGCAACAAGAAAATCAGAGGAAAAATATTCTCAAGTATCAAATAATGATACAACAATAGCTTCTTCTAATTATTTGATGGAATG
TCTATCCCACATATTAACTCCTTTCTTCATATGATAATTGAAGAACATTACTCTCGGGAACTGGGAATTTGGAAAATAAGTTGGTTGTGTAAAGTAGATA
GCTTATGGCTTAGTATCCATTGATGATATCAGCTAACAAGCTAGAGTAGAATCTCGCAATTACTACTCTTATAAGTATACGAACATTTGAGGGGTGTTGT
GAATTGTTCTGTTTTCCCTCTAGATTCAACTATTAGTTTATCACATTCGTTATTCATATTCCATGCTGATTTTACTGTTGTAGATTAAGGTGTTGCAGAT
GTTGTCATTAATGCACAAACATGTTATTTCTATCGATGGAGGTGTTGTTCTAATGCCCAACAATTGGAAATATATGCGTAGGGGGATTAGTGTTTGGTTG
GATGTACCTGTAGAAGCCTTGGCTTAGAGAATAACAATTATAGGAACTGATTCTCGCCCACTCCTACATTCTGAAGCAAGAAATGCATACATGGAGATAT
GGCAGCAAAATTAAGCCAAAGAGACGTGTCAGATTTTTCTCCAACTGCTATTGCTATGGAGGCACCGGAACAAATCAAATGCTTTCTTATAAGTGAAGAT
GGGTTTTAAGCATGTGCTAGCACAATCTTGAGACACAAGCATGCTTTTAATTGTATATGTTTTTCTCTTTAATAATAATTATAGCATGACAATATATTGT
ATTTTAAACATTTGTGTATTTATTATTAGAGGAGTTCTTACCTAGCTTCGTAGAGTCTTAGTTAGGTGCAAGACATTGCAAAAGGAGTTCATACCTAGCT
CTGACTGATTCTCAGGGTTATGGTTGTTCTAGTCTTTTCATAACTGGAAGTGTTGTTGCTAC