Detailed information on CNT0002948 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q43130|ENO_MESCR, E-value = 7e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002948

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.5470.34400.5042.8090.6742.4443.471.15300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (58 aa)
VLCFFPCFSLPWSLEVCVPKPFRFPFYLSISLSPVLSRASALGGVAIWRLKMRRKAPH*

>peptide 2 (44 aa)
CFAFFHVSLSRGVWKCAFPSLFAFHFIFPFLSLPCFLELVLWEE*

>peptide 3 (34 aa)
MELLFHVTTGLNNHFVYECMFGFPFIFSNYIGNP*

>peptide 4 (36 aa)
ALLFSMFLSPVEFGSVRSQAFSLSILSFHFSLSRAF*

Sequence

>CNT0002948
GTGCTTTGCTTTTTTCCATGTTTCTCTCTCCCGTGGAGTTTGGAAGTGTGCGTTCCCAAGCCTTTTCGCTTTCCATTTTATCTTTCCATTTCTCTCTCTC
CCGTGCTTTCTAGAGCTAGTGCTCTGGGAGGAGTAGCGATTTGGCGGTTGAAGATGCGAAGGAAGGCACCACACTAAGTAAGGTTGCGAGAATGGAAAGC
GTTTTAGAGAGTGTCATGGGGGCACAAAAAAAGTTTTATTTTTGTTGATAGAGGGTTTTACTCGGTTGAAACGTTGTTGCTTCTGCTCGCTCTTAAGGAC
CCAACTCAACATACTGCTATTGACAACTTAATGGTTCAACAGCTTGATGGAACTGTTAACGAATGGGGTTGGTGCAAGCAAAAGGTGCTTAGCTGATGGA
ACTGTTATTCCACGTTACCACGGGTTTGAATAATCATTTTGTTTATGAATGCATGTTTGGATTTCCTTTTATTTTTTCCAATTATATAGGTAACCCTTAA
ATTTTCCCTTCAGTTTAT