Detailed information on CNT0002960 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q949Z1|PGLR4_ARATH, E-value = 6e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0028152, E-value = 2e-10 (O. sativa)

Expression of CNT0002960

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0470.420.42901.4980.8360.1640.7672.0522.7350.4460.9751.68400.775leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLTLMLETQALVLSFPRLPMLIPCPGPQLTLCTYMFEHPVCIEIQSSPAK*

>peptide 2 (36 aa)
MSLSPTLPYECSNEMEIFHNLPQAIELLYINTSLEF*

>peptide 3 (59 aa)
MSVVPFSSSLRCEGLEKCGAEVITSNETRLMARNTKSKALVYGTNRVLFNWVMQCGFYG*

>peptide 4 (31 aa)
MPWSTVDIVYIYVRASSLYRNTVISCKIIEI*

Sequence

>CNT0002960
CTTGAATTGGTTTTAACTCAACAGAGGTTAGAGAAACATCTACACAAGGTTCTTTTGTCGCAGTAGAATTGATCAATCACAATTGGGAGTTCAACTTCAG
AAACTTGTATGTTTGAGAATAGCACTCCTTGTACAGAACCTGATCCACCCTGCAGATATACATGTTAACTTTAATGTTGGAGACACAGGCTCTGGTGTTA
TCCTTTCCTAGACTTCCAATGCTGATTCCATGCCCTGGTCCACAGTTGACATTGTGTACATATATGTTCGAGCATCCAGTTTGTATCGAAATACAGTCAT
CTCCTGCAAAATAATTGAAATTTAAATATATTGAGCCAACTTGGACCATTTATGTCAGTTGTGCCATTTTCATCCAGCCTAAGGTGCGAAGGACTCGAGA
AATGTGGGGCAGAAGTTATAACTTCTAATGAGACAAGATTGATGGCGAGAAATACAAAATCAAAAGCTCTTGTTTATGGAACTAACAGAGTACTATTCAA
TTGGGTGATGCAGTGTGGATTTTACGGTTGACACGTGCCATGTAGCATATGACTTGCAGGCATTGGAAGGTACTTTTGTTGATATGTGTCCAACATGGTT
GTGGATAAGATAAGATAATGCCATGCCATTTTGAGAATCATAGAAAATGCATAGAACTTTGTTTTTTAGTTTTCTTCTTGTCTTGAACTTTCATTTTCAT
TTTAGCTAATGTCTCTATCTCCTACATTGCCCTATGAATGTTCAAATGAAATGGAAATATTCCATAACTTACCGCAGGCCATAGAGCTGCTGTATATCAA
CACATCTTTGGAGTTCTGAAGGTGAATTCCATCTGTGTTAGGACTGTCCCC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G39340.1 Uncharacterized protein protein coding CNT0002960 523 329 CDS Trans
GLYMA08G39340.1 Uncharacterized protein protein coding CNT0002960 501 188 CDS Trans
GLYMA08G39340.2 Uncharacterized protein protein coding CNT0002960 523 329 CDS Trans
GLYMA08G39340.2 Uncharacterized protein protein coding CNT0002960 501 188 CDS Trans