Detailed information on CNT0002966 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q39241|TRXH5_ARATH, E-value = 3e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002966

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MEEKITDNSSTSILTKSAFANSAAMWLNTGAMNLQGPHQDAVKYITT*

Sequence

>CNT0002966
AGCCAAGGGAAACTAACAAAAGTAATTGGATTGAATAAAGAAAAGAGAGAATATGGAAGAGAAAATCACAGATAATTCGTCCACGTCGATCTTGACGAAG
TCAGCGTTTGCAAACTCTGCGGCCATGTGGTTAAACACTGGAGCGATGAATTTGCAAGGGCCACACCAGGACGCCGTGAAATATATCACAACCTGATTTT
TATTTATATGTTGCAGTTCAAAAGAAAATGTTGAGATTGAGATGAAGAAACATGCACGTACGTACATATATAGAAACGCAATTAATTAAATAAAGTTGAG
ATGTACGTACTAGCTTAGGGGACTCTTTGATCTTT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G37590.1 Uncharacterized protein protein coding CNT0002966 223 152 CDS Trans
GLYMA09G37605.1 Thioredoxin protein coding CNT0002966 305 222 CDS Trans
GLYMA18G49020.1 Uncharacterized protein protein coding CNT0002966 689 337 CDS_UTR Trans
GLYMA18G49020.2 Uncharacterized protein protein coding CNT0002966 689 337 CDS Trans
GLYMA18G49020.3 Uncharacterized protein protein coding CNT0002966 689 337 CDS_UTR Trans
GLYMA18G49031.1 Thioredoxin protein coding CNT0002966 922 335 CDS Cis
GLYMA18G49040.3 Uncharacterized protein protein coding CNT0002966 220 156 CDS Trans