Detailed information on CNT0002976 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q56YA5|SGAT_ARATH, E-value = 8e-34

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002976

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MDRLLKLHITKNNQEQQRTNLWFFLTCVLRCRLRIINQVKFCKYFICTDYPIITFPLA*

>peptide 2 (34 aa)
RVYVHLQRSVKEGNIYFTEFPKEQKKGSKDKNDL*

>peptide 3 (39 aa)
MHWQQQLHFQALQDSPHLSVSSPHQLDIPTVATGKYLKN*

Sequence

>CNT0002976
AGAGTGTATGTTCATCTTCAAAGGAGTGTAAAAGAGGGTAATATATATTTTACAGAATTTCCGAAAGAGCAGAAAAAAGGAAGTAAAGACAAGAATGACT
TGTGACTCAAATCCTGGAAGGGATCATAGGAATAGTGTCCTGTAAGTATGCACTGGCAGCAGCAACTCCACTTCCAAGCTTTACAGGATAGCCCACATCT
TTCAGTATCATCTCCACACCAGCTAGACATCCCAACAGTTGCAACTGGAAAATATTTAAAGAATTAACAATATCAAAGGTTGGCAATGGAGATATAAGGT
TGGCTTAGTGGTGAATGAAGAAGAGAGGGAGAGGAGAGGTCATGGGTTTGAATCCTTCCCACTAACAAAAAACTAATAATTAACAACTAAGCTTTGCCAA
TAGAAAAACAAAGAAAGGTTGGCAACTTGCATCTCAGTAGTAACTAGTAAACAAGCAATTTTCACATATATAATTTGATATTACATGGTAGATTAAAATT
ATCTGGTATACTGTAAAGAATAAAACCTTGCTGCTATTCCTATCACAGCTTTGAAACTTGCATTATTGAAGTTGGACAGAAAGTGAATCAAAACAAAGAT
GGATAGACTCTTAAAGCTTCATATAACAAAAAACAACCAAGAACAACAGAGAACAAATTTATGGTTTTTTTTAACATGTGTTCTTAGATGCAGATTAAGA
ATAATTAATCAAGTCAAATTTTGTAAATATTTTATATGTACTGATTATCCTATTATTACTTTTCCTTTGGCTTGAGCAATGATTTTTAAATTTCTTAACT
TCACTACAAATAAATGCAATCTGAGTTCCGAGAGGATAAACTAGTTTCATGATTATATGCTGATGGGTGATTGGAAATCAACATTACCTCATTCAAGTTG
CCAAGATGTCCAATTCTGAAAACCTTCCCAGCAACTTTGTTCAGTCCAAGACCTAAGCTCAAATTGTATCTCTTCCATGCCCTTCTAACTATTTCAGTAC
TATCAATGTAAGCAGGAACAAGAACAGCAGTCACAGTGTCACTGTACCACTCTTCCTTTTGGGTGCAATTCTTCAAACCCCATGCCTCTACAGCAAGTC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G41460.1 Uncharacterized protein protein coding CNT0002976 882 383 CDS Trans
GLYMA08G41460.1 Uncharacterized protein protein coding CNT0002976 739 329 CDS_UTR Trans
GLYMA08G41460.2 Uncharacterized protein protein coding CNT0002976 882 383 CDS Trans
GLYMA08G41460.2 Uncharacterized protein protein coding CNT0002976 739 329 CDS_UTR Trans