Detailed information on CNT0002981 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8GYA4|CRK10_ARATH, E-value = 1e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008295, E-value = 6e-14 (S. tuberosum)

Expression of CNT0002981

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)42.41140.01823.2891.1451.2482.1951.4720.464.3595.5373.6815.1173.89300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.545

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PELTSHDMFGRLVVALSIKKAGFVGTGRVIEQLFSMSATLAMVGLLARFS*

>peptide 2 (40 aa)
MWVHLIISFCELLFNIGSIIFVTVPSCQLLHACKNLLNCK*

Sequence

>CNT0002981
CCTGAATTAACTTCCCATGACATGTTTGGAAGGCTTGTAGTTGCACTATCCATAAAAAAAGCAGGTTTTGTAGGCACTGGGAGAGTGATAGAACAACTAT
TTAGCATGAGTGCAACGTTAGCCATGGTTGGTCTGTTGGCTAGATTTTCTTGAACACAGAGTAAACCAATGTGGGTGCATCTTATCATTTCATTCTGTGA
ACTATTGTTTAATATTGGATCTATAATATTTGTAACTGTCCCCTCTTGCCAGCTTCTCCATGCCTGCAAGAATTTGCTCAATTGCAAATAATTAACCAGA
TATTAGTAGATCACCAAATTCCATTTTCTCATTTTAATATTTAGGAGCCCACAATCTTTTAATTCATACATTTAATTGGAAGGGAAAAATAGTATTCAAT
AAAGCAAGACTTACAAAGTTTAGTAGATCTTCCACATTCTCCCCATGACGAATACCATGGTTTTTTTGGCCACTTACAATCTCAAGAACTAGTACACCAA
AACTGAAGACATCTGATTTTATTGAAAATTGTCCATGCATTATATATTCTGGTGCCATATATCCACTACATGCCAATATGGACTGGCTTAATTAGTAAAG
CATATTATGATGATTCTTTACGGTAGTAATTTTTCACTATTTCCATTTTACATACATCCATTGATATTAATGTTCTAATTTTAATTTCATACTAGTGTAA
AAGTAATATATGCTATCACTCAAACGTCAAATATTTTTAAATGATCTTAACTATTAATCAAACGTTAAACTCTTTGAGTAAATTATGAATACTTGACTAA
GTAATAATGTAAAAAAAATTGATACTTGATTCAAATTAAGCTCTCATGGCAATTAGGAAGCTCTAGCATGTTATAATACTTACTAGGTTCCAACAACTCG
ACTTGTATTTTCTTGTGTTTGACCTGCAACAATCAGTCTTGCCATACCAAAATCTGATATTTTAGGAATCATCTCTTCATCTAAGAGAACATTGCTTGCT
TTGAGATCACGATGTATAATGCGCAATCGTGAATCCTCGTGAAGATAAAGAAGACCTCGAGCAATACCTCGAATGATTTTGTATCGTCTATCCCAATCCA
GTCGTGCTTTCTTTGTTGGATCTGTATGTGCGTCA

lncRNA-RNA interactions

Number of interactions: 46

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G01715.1 Uncharacterized protein protein coding CNT0002981 616 741 CDS Trans
GLYMA01G01730.2 Uncharacterized protein protein coding CNT0002981 2968 1135 CDS Trans
GLYMA06G41030.3 Serine/threonine-protein kinase protein coding CNT0002981 100 108 CDS Trans
GLYMA06G41030.6 Serine/threonine-protein kinase protein coding CNT0002981 100 108 CDS Trans
GLYMA06G41140.2 Uncharacterized protein protein coding CNT0002981 107 101 CDS Trans
GLYMA09G27850.4 Uncharacterized protein protein coding CNT0002981 162 209 CDS Trans
GLYMA10G39910.1 Uncharacterized protein protein coding CNT0002981 276 193 CDS Trans
GLYMA10G39910.1 Uncharacterized protein protein coding CNT0002981 329 236 CDS Trans
GLYMA10G39950.2 Uncharacterized protein protein coding CNT0002981 260 189 CDS Trans
GLYMA10G39950.3 Uncharacterized protein protein coding CNT0002981 260 189 UTR3 Trans
GLYMA10G39971.1 Uncharacterized protein protein coding CNT0002981 409 249 CDS Trans
GLYMA10G39981.1 Uncharacterized protein protein coding CNT0002981 416 267 CDS Trans
GLYMA10G39981.1 Uncharacterized protein protein coding CNT0002981 438 264 CDS Trans
GLYMA10G40001.1 Uncharacterized protein protein coding CNT0002981 341 266 CDS Trans
GLYMA12G20460.3 Uncharacterized protein protein coding CNT0002981 144 192 CDS Trans
GLYMA12G21090.4 Serine/threonine-protein kinase protein coding CNT0002981 112 101 CDS_UTR Trans
GLYMA15G35960.2 Uncharacterized protein protein coding CNT0002981 96 94 CDS Trans
GLYMA15G35960.3 Uncharacterized protein protein coding CNT0002981 151 122 CDS Trans
GLYMA18G47250.1 Uncharacterized protein protein coding CNT0002981 666 239 CDS Trans
GLYMA18G47250.1 Uncharacterized protein protein coding CNT0002981 3034 1135 CDS Cis
GLYMA20G27400.2 Uncharacterized protein protein coding CNT0002981 222 162 CDS Trans
GLYMA20G27410.1 Uncharacterized protein protein coding CNT0002981 330 240 CDS Trans
GLYMA20G27440.1 Uncharacterized protein protein coding CNT0002981 383 259 CDS Trans
GLYMA20G27460.1 Uncharacterized protein protein coding CNT0002981 408 290 CDS Trans
GLYMA20G27460.1 Uncharacterized protein protein coding CNT0002981 356 196 CDS Trans
GLYMA20G27510.1 Uncharacterized protein protein coding CNT0002981 442 271 CDS Trans
GLYMA20G27525.1 Uncharacterized protein protein coding CNT0002981 214 156 CDS_UTR Trans
GLYMA20G27525.1 Uncharacterized protein protein coding CNT0002981 363 196 CDS Trans
GLYMA20G27540.1 Uncharacterized protein protein coding CNT0002981 425 307 CDS Trans
GLYMA20G27540.2 Uncharacterized protein protein coding CNT0002981 425 307 CDS Trans
GLYMA20G27550.1 Uncharacterized protein protein coding CNT0002981 446 270 CDS Trans
GLYMA20G27550.1 Uncharacterized protein protein coding CNT0002981 375 266 CDS Trans
GLYMA20G27550.2 Uncharacterized protein protein coding CNT0002981 446 270 CDS Trans
GLYMA20G27550.2 Uncharacterized protein protein coding CNT0002981 375 266 CDS Trans
GLYMA20G27560.2 Uncharacterized protein protein coding CNT0002981 428 271 CDS Trans
GLYMA20G27570.2 Uncharacterized protein protein coding CNT0002981 442 271 CDS Trans
GLYMA20G27590.1 Uncharacterized protein protein coding CNT0002981 411 300 CDS Trans
GLYMA20G27596.1 Uncharacterized protein protein coding CNT0002981 218 190 CDS Trans
GLYMA20G27603.1 Uncharacterized protein protein coding CNT0002981 389 238 CDS Trans
GLYMA20G27603.1 Uncharacterized protein protein coding CNT0002981 214 131 CDS Trans
GLYMA20G27610.1 Uncharacterized protein protein coding CNT0002981 231 269 CDS Trans
GLYMA20G27610.1 Uncharacterized protein protein coding CNT0002981 283 189 CDS Trans
GLYMA20G27610.2 Uncharacterized protein protein coding CNT0002981 231 269 CDS Trans
GLYMA20G27610.2 Uncharacterized protein protein coding CNT0002981 283 189 CDS_UTR Trans
GLYMA20G27620.1 Uncharacterized protein protein coding CNT0002981 384 250 CDS Trans
GLYMA20G27620.1 Uncharacterized protein protein coding CNT0002981 309 182 CDS Trans