Detailed information on CNT0002993 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5VQ78|COB21_ORYSJ, E-value = 2e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002993

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.5330.2230.5240.4913.1912.0423.5692.8591.79600leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (35 aa)
WASPFSLFHEIPNLSPPPCPITSIPSFTHLPISLA*

>peptide 2 (78 aa)
MENVMDRTRSEVENSKKISIQNFAKSLLDVDDNLGRASSVVKDSFSKIESLEESSEAAQLLKTLLEGVEMIEKQLAEV*

>peptide 3 (62 aa)
MGFTLFSVSRNSQPFSTTLSNNFHSLLHPSPNKPRMSMQVKKQRYLISLNKLKLWIKPKNQM*

>peptide 4 (52 aa)
MFFKEFGHSRSLNSNGFHWAKSSYHWPIFSTGCMRGDHYRVICFQLLLPTCS*

>peptide 5 (36 aa)
MTNYIGRKRTVVETSTLYNGVSFKDAQVVLSASVLS*

>peptide 6 (29 aa)
MSRCPMYYDLKFAFLVWLQLATTSELLCQ*

>peptide 7 (78 aa)
MPIKPLKQVWDYQTKSYVQTLKGHTQYVYVVCFDPEPSIIITGSEDGTMRIWHSTTYRHENTLNYVLQRVWAQQIFKF*

Sequence

>CNT0002993
ATGGGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAATAAGC
CTCGCATGAGCATGCAAGTGAAGAAGCAAAGGTATCTGATCAGTCTGAACAAGCTGAAGCTGTGGATCAAACCAAAGAATCAGATGTAGAGAGTGAATGT
GATCTATCCAGGGATGATTTGATAAAGCTTGTTGTTGAGAAGGAACAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGAGATGGAGAATGT
CATGGATAGGACAAGAAGTGAAGTAGAGAATTCGAAAAAAATTTCTATACAGAATTTTGCAAAGAGTTTACTAGATGTAGATGATAATTTGGGAAGAGCT
TCCTCAGTTGTAAAGGACAGCTTTTCAAAAATTGAATCTCTTGAGGAGTCTTCTGAAGCAGCACAACTCCTAAAAACACTTCTAGAAGGTGTTGAAATGA
TAGAGAAACAACTTGCAGAGGTATGAGGGAAAATTTAATTTGTTTGTTGAAACGGTCAATATAAAAAGTGTAGGAGTAGATGTCGAGGTGTCCTATGTAC
TATGACCTGAAGTTTGCATTTCTTGTTTGGCTTCAACTTGCAACTACCAGTGAATTATTATGCCAATAAAACCTTTGAAACAAGTATGGGATTATCAAAC
CAAAAGTTATGTTCAGACTCTAAAAGGTCACACACAATATGTATATGTTGTATGCTTTGATCCTGAACCATCTATAATCATTACTGGCTCTGAGGATGGC
ACAATGCGCATTTGGCATTCAACAACTTATAGGCATGAGAACACATTGAACTATGTTCTTCAAAGAGTTTGGGCACAGCAGATCTTTAAATTCTAATGGG
TTTCACTGGGCCAAATCCAGCTACCATTGGCCTATTTTTTCAACAGGTTGCATGCGGGGTGATCATTATCGCGTAATTTGTTTCCAACTACTACTTCCCA
CGTGTTCTTGATTAATCTCCAGGTGGGGATATCATCTGGTGCTGCTGCAGTTAACAAAGTTTTCTACATCAGTCGAAAAAGGACCATTGTAGAACACATG
ACAAACTACATCGGTCGTAAAAGGACCGTCGTAGAAACATCCACCCTCTACAACGGCGTTAGTTTCAAAGATGCGCAAGTAGTGCTTTCTGCATCAGTGC
TGTCGTAGGAACGACTTTGTTTATCATGTGTTTCTAAGACAGTCCTTTTACGACCGTCGTAGAAACATCCACCCTCTACAACGGCGTTAGTTTCAAAGAT
GCGCGTCCACTGTCTTTGAAAGGCGTTTTCCACCGATGTAAAATGCTATTTTTGTAGTAGTGTTAAGGATCCTCTTGACATTAAATTAAACTGCTTGCTC
AAAGAAAGATAGGATTGTTATTTTTACTCTAGTTGTTCAATTTCCTCTTAAAACATACACGGTGCAACTAGTTTTTGTTTCACTTTCAGCCCCCTTCATG
TTAATTCCACACTGAAAAGACAAAATGTGTGGCCCTTTTTTTCTCTCAAAGAAACACATGCCTCACTATCCCATATTAAGCTGAATTGGAAGGTAC