SEARCH OPTIONS

lncRNA id
CPC status
Max. peptide length
Max. expression
Potential function
Results confidence
Order results by

Current search details:

Found 2569 records in
Amborella trichopoda

CPC status:   #
Max. peptide length:   #
Max. expression:   #
Potential function:   #
Results confidence:   Show all
Order by:   lncRNA ID


Record details CANTATAdb ID Species Location CPC status (score) Swiss-Prot best hit Max. peptide length Max. expression Potential function Confidence
CNT0024122 A. trichopoda AmTr_v1.0_scaffold00002:7301975-7321066 (-) noncoding (-0.933495)0.0000009 (sp|C3PL27|RL30_CORA7) 104 17.643 Confident lncRNA
CNT0024121 A. trichopoda AmTr_v1.0_scaffold00002:7301975-7321066 (-) noncoding (-0.879952)0.0000008 (sp|C3PL27|RL30_CORA7) 141 18.959 Confident lncRNA
CNT0024120 A. trichopoda AmTr_v1.0_scaffold00002:5199023-5234587 (-) noncoding (-0.984607)3e-16 (sp|P80299|HYES_RAT) 53 61.192 Confident lncRNA
CNT0024119 A. trichopoda AmTr_v1.0_scaffold00002:5153032-5167531 (-) coding (0.253845)8e-64 (sp|P74038|RSMI_SYNY3) 303 22.326 Low-confidence lncRNA
CNT0024118 A. trichopoda AmTr_v1.0_scaffold00002:2246027-2262717 (-) noncoding (-0.725724)1e-57 (sp|Q5QM99|RL37A_ORYSJ) 92 77.522 Low-confidence lncRNA
CNT0024117 A. trichopoda AmTr_v1.0_scaffold00002:6026035-6031698 (+) noncoding (-0.168952)1e-79 (sp|F4ITL6|RTE1_ARATH) 234 63.333 Low-confidence lncRNA
CNT0024116 A. trichopoda AmTr_v1.0_scaffold00002:6001969-6031698 (+) noncoding (-0.156741)6e-80 (sp|F4ITL6|RTE1_ARATH) 234 65.188 Low-confidence lncRNA
CNT0024115 A. trichopoda AmTr_v1.0_scaffold00002:341958-350838 (+) noncoding (-0.490016)3e-25 (sp|Q9M1K1|ORG2_ARATH) 239 34.882 Low-confidence lncRNA
CNT0024114 A. trichopoda AmTr_v1.0_scaffold00002:9711841-9712545 (-) noncoding (-0.965581)- 49 11.968 Confident lncRNA
CNT0024113 A. trichopoda AmTr_v1.0_scaffold00002:2378542-2383881 (+) noncoding (-0.604034)- 71 32.717 Confident lncRNA
CNT0024112 A. trichopoda AmTr_v1.0_scaffold00002:9126859-9137769 (+) coding (2.25056)2e-103 (sp|Q8R146|APEH_MOUSE) 777 29.681 Low-confidence lncRNA
CNT0024111 A. trichopoda AmTr_v1.0_scaffold00002:1053150-1062543 (-) coding (0.410228)0.000000000000003 (sp|P87156|TSR4_SCHPO) 242 12.092 Confident lncRNA
CNT0024110 A. trichopoda AmTr_v1.0_scaffold00002:1551145-1551510 (-) noncoding (-1.21921)- - 0 splicing regulationConfident lncRNA
CNT0024109 A. trichopoda AmTr_v1.0_scaffold00002:6557981-6561180 (+) noncoding (-0.55582)- 177 32.24 Confident lncRNA
CNT0024108 A. trichopoda AmTr_v1.0_scaffold00002:2820422-2821086 (-) noncoding (-0.990704)- 54 3.118 Confident lncRNA
CNT0024107 A. trichopoda AmTr_v1.0_scaffold00002:4608887-4630353 (-) noncoding (-0.621929)0.000000001 (sp|O82170|IKU1_ARATH) 290 17.937 Confident lncRNA
CNT0024106 A. trichopoda AmTr_v1.0_scaffold00002:4752440-4767010 (-) coding (1.43503)0.000003 (sp|Q5WDZ7|PCKA_BACSK) 443 40.305 Confident lncRNA
CNT0024105 A. trichopoda AmTr_v1.0_scaffold00002:10085542-10086005 (-) noncoding (-1.03127)0.0000002 (sp|O65082|RL15B_PICMA) 49 35.912 Confident lncRNA
CNT0024104 A. trichopoda AmTr_v1.0_scaffold00002:3713978-3714643 (-) noncoding (-0.9247)- 47 60.786 Confident lncRNA
CNT0024103 A. trichopoda AmTr_v1.0_scaffold00002:5839653-5840030 (-) noncoding (-0.560734)- 88 2.094 Confident lncRNA
CNT0024102 A. trichopoda AmTr_v1.0_scaffold00002:8320395-8322254 (+) noncoding (-1.11597)- 85 3.211 Confident lncRNA
CNT0024101 A. trichopoda AmTr_v1.0_scaffold00002:7942196-7945819 (-) noncoding (-0.759601)3e-44 (sp|Q9FGZ9|UBL5_ARATH) 73 460.202 Low-confidence lncRNA
CNT0024100 A. trichopoda AmTr_v1.0_scaffold00002:4970989-5032063 (+) noncoding (-0.94775)7e-38 (sp|Q9SLN5|MAP1A_ARATH) 146 18.54 Confident lncRNA
CNT0024099 A. trichopoda AmTr_v1.0_scaffold00002:5027789-5032063 (+) coding (1.43294)4e-38 (sp|Q9SLN5|MAP1A_ARATH) 146 21.752 Confident lncRNA
CNT0024098 A. trichopoda AmTr_v1.0_scaffold00002:1550301-1551510 (+) noncoding (-0.960797)- 59 0 Confident lncRNA
CNT0024097 A. trichopoda AmTr_v1.0_scaffold00002:7162055-7162531 (+) noncoding (-1.07724)- 67 2058.7 Confident lncRNA
CNT0024096 A. trichopoda AmTr_v1.0_scaffold00002:8999080-8999423 (-) noncoding (-1.00473)- 57 4.859 Confident lncRNA
CNT0024095 A. trichopoda AmTr_v1.0_scaffold00002:8985615-8994040 (-) noncoding (-0.382283)- 254 37.956 Confident lncRNA
CNT0024094 A. trichopoda AmTr_v1.0_scaffold00002:8652498-8653566 (-) noncoding (-1.04538)- 54 11.606 Confident lncRNA
CNT0024093 A. trichopoda AmTr_v1.0_scaffold00002:7716207-7738379 (+) noncoding (-0.478912)2e-37 (sp|Q9D099|ACER3_MOUSE) 256 15.64 Low-confidence lncRNA
CNT0024092 A. trichopoda AmTr_v1.0_scaffold00002:5307651-5317754 (-) coding (1.51679)2e-34 (sp|P46269|QCR8_SOLTU) 118 200.606 Low-confidence lncRNA
CNT0024091 A. trichopoda AmTr_v1.0_scaffold00002:3129552-3182263 (-) coding (0.76265)2e-61 (sp|P47816|PDCD2_RAT) 414 12.113 Low-confidence lncRNA
CNT0024090 A. trichopoda AmTr_v1.0_scaffold00002:5564051-5569379 (+) coding (0.207502)0.000000000001 (sp|O34331|YLBH_BACSU) 325 22.804 Confident lncRNA
CNT0024089 A. trichopoda AmTr_v1.0_scaffold00002:5564051-5569379 (+) coding (0.213956)0.0000000000009 (sp|O34331|YLBH_BACSU) 324 27.944 Confident lncRNA
CNT0024088 A. trichopoda AmTr_v1.0_scaffold00002:1053150-1062543 (-) coding (0.851817)2e-16 (sp|P87156|TSR4_SCHPO) 390 11.547 Confident lncRNA
CNT0024087 A. trichopoda AmTr_v1.0_scaffold00002:7005422-7011908 (+) noncoding (-0.937399)3e-70 (sp|Q6NLH0|RPB9A_ARATH) 114 13.104 Low-confidence lncRNA
CNT0024086 A. trichopoda AmTr_v1.0_scaffold00002:1198762-1200788 (-) noncoding (-0.557716)- 99 4.277 Confident lncRNA
CNT0024085 A. trichopoda AmTr_v1.0_scaffold00002:1207464-1212732 (-) noncoding (-0.987658)- 68 10.862 Confident lncRNA
CNT0024084 A. trichopoda AmTr_v1.0_scaffold00002:1192971-1197849 (-) noncoding (-0.91085)0.000001 (sp|Q9SZN7|HIP26_ARATH) 89 2.653 Confident lncRNA
CNT0024083 A. trichopoda AmTr_v1.0_scaffold00002:7850823-7852262 (-) noncoding (-0.156195)0.000000000000004 (sp|P24076|BGIA_MOMCH) 85 5.99 Confident lncRNA
CNT0024082 A. trichopoda AmTr_v1.0_scaffold00002:2206164-2212164 (-) noncoding (-0.810013)- 89 3.128 Confident lncRNA
CNT0024081 A. trichopoda AmTr_v1.0_scaffold00002:4450029-4454327 (+) noncoding (-1.11836)- 86 3.933 Confident lncRNA
CNT0024080 A. trichopoda AmTr_v1.0_scaffold00002:9387153-9387586 (+) noncoding (-1.01246)- 51 163.09 Confident lncRNA
CNT0024079 A. trichopoda AmTr_v1.0_scaffold00002:4970989-5032063 (+) noncoding (-0.920147)3e-39 (sp|Q9SLN5|MAP1A_ARATH) 146 19.737 Confident lncRNA
CNT0024078 A. trichopoda AmTr_v1.0_scaffold00002:4970989-5032063 (+) noncoding (-0.920147)3e-39 (sp|Q9SLN5|MAP1A_ARATH) 146 19.737 Confident lncRNA
CNT0024077 A. trichopoda AmTr_v1.0_scaffold00002:7859528-7861419 (+) noncoding (-0.153838)3e-22 (sp|P19873|ITH5_CUCMA) 69 16.245 Low-confidence lncRNA
CNT0024076 A. trichopoda AmTr_v1.0_scaffold00002:7859528-7861419 (+) coding (0.0323806)4e-21 (sp|P19873|ITH5_CUCMA) 72 13.175 Low-confidence lncRNA
CNT0024075 A. trichopoda AmTr_v1.0_scaffold00002:7874196-7877809 (+) coding (0.239214)3e-17 (sp|P82381|ICI_LINUS) 76 140.783 Confident lncRNA
CNT0024074 A. trichopoda AmTr_v1.0_scaffold00002:5838728-5839399 (-) noncoding (-1.1265)- 99 2.763 Confident lncRNA
CNT0024073 A. trichopoda AmTr_v1.0_scaffold00002:3661921-3669451 (+) coding (0.45092)0 (sp|O23596|GLPT4_ARATH) 424 17.044 Low-confidence lncRNA