Species | Genome file |
Amborella trichopoda | Amborella_trichopoda.AMTR1.0.dna.toplevel.fa |
Ananas comosus | ftp://ftp.ncbi.nih.gov/genomes/Ananas_comosus/Assembled_chromosomes/seq/ |
Arabidopsis lyrata | Arabidopsis_lyrata.v.1.0.dna.toplevel.fa |
Arabidopsis thaliana | Arabidopsis_thaliana.TAIR10.dna.toplevel.fa |
Brachypodium distachyon | Brachypodium_distachyon.v1.0.dna.toplevel.fa |
Brassica napus | Brassica_napus.AST_PRJEB5043_v1.dna.toplevel.fa |
Brassica oleracea | Brassica_oleracea.v2.1.dna.toplevel.fa |
Brassica rapa | Brassica_rapa.IVFCAASv1.dna.toplevel.fa |
Chenopodium quinoa | ftp://ftp.ncbi.nih.gov/genomes/Chenopodium_quinoa/CHR_Un/ |
Chlamydomonas reinhardtii | Chlamydomonas_reinhardtii.v3.1.dna.toplevel.fa |
Chondrus crispus | Chondrus_crispus.ASM35022v2.dna.toplevel.fa |
Corchorus capsularis | Corchorus_capsularis.CCACVL1_1.0.dna.toplevel.fa |
Cucumis sativus | ftp://ftp.ncbi.nih.gov/genomes/Cucumis_sativus/Assembled_chromosomes/seq/ |
Galdieria sulphuraria | Galdieria_sulphuraria.ASM34128v1.dna.toplevel.fa |
Glycine max | Glycine_max.V1.0.dna.toplevel.fa |
Hordeum vulgare | Hordeum_vulgare.Hv_IBSC_PGSB_v2.dna.toplevel.fa |
Leersia perrieri | Leersia_perrieri.Lperr_V1.4.dna.toplevel.fa |
Malus domestica | ftp://ftp.ncbi.nih.gov/genomes/Malus_domestica/Assembled_chromosomes/seq/ |
Manihot esculenta | ftp://ftp.ncbi.nih.gov/genomes/Manihot_esculenta/Assembled_chromosomes/seq/ |
Medicago truncatula | Medicago_truncatula.MedtrA17_4.0.dna.toplevel.fa |
Musa acuminata | Musa_acuminata.MA1.dna.toplevel.fa |
Oryza barthii | Oryza_barthii.O.barthii_v1.dna.toplevel.fa |
Oryza brachyantha | Oryza_brachyantha.Oryza_brachyantha.v1.4b.dna.toplevel.fa |
Oryza nivara | Oryza_nivara.AWHD00000000.dna.toplevel.fa |
Oryza punctata | Oryza_punctata.AVCL00000000.dna.toplevel.fa |
Oryza rufipogon | Oryza_rufipogon.OR_W1943.dna.toplevel.fa |
Oryza sativa | ftp://ftp.ncbi.nih.gov/genomes/Oryza_sativa_Japonica_Group/Assembled_chromosomes/seq/ |
Physcomitrella patens | Physcomitrella_patens.ASM242v1.dna.toplevel.fa |
Populus trichocarpa | Populus_trichocarpa.JGI2.0.dna.toplevel.fa |
Prunus persica | Prunus_persica.Prupe1_0.dna.toplevel.fa |
Selaginella moellendorffii | Selaginella_moellendorffii.v1.0.dna.toplevel.fa |
Setaria italica | Setaria_italica.JGIv2.0.dna.toplevel.fa |
Solanum lycopersicum | Solanum_lycopersicum.SL2.50.dna.toplevel.fa |
Solanum tuberosum | Solanum_tuberosum.SolTub_3.0.dna.toplevel.fa |
Sorghum bicolor | Sorghum_bicolor.Sorghum_bicolor_v2.dna.toplevel.fa |
Theobroma cacao | Theobroma_cacao.Theobroma_cacao_20110822.dna.toplevel.fa |
Trifolium pratense | Trifolium_pratense.Trpr.dna.toplevel.fa |
Vitis vinifera | Vitis_vinifera.IGGP_12x.dna.toplevel.fa |
Zea mays | Zea_mays.AGPv4.dna.toplevel.fa |
Species | Annotations file |
Amborella trichopoda | Amborella_trichopoda.AMTR1.0.37.gtf |
Ananas comosus | ref_ASM154086v1_top_level.gff3 |
Arabidopsis lyrata | Arabidopsis_lyrata.v.1.0.37.gtf |
Arabidopsis thaliana | Arabidopsis_thaliana.TAIR10.37.gtf |
Brachypodium distachyon | Brachypodium_distachyon.v1.0.37.gtf |
Brassica napus | Brassica_napus.AST_PRJEB5043_v1.37.gtf |
Brassica oleracea | Brassica_oleracea.v2.1.37.gtf |
Brassica rapa | Brassica_rapa.IVFCAASv1.37.gtf |
Chenopodium quinoa | ref_ASM168347v1_top_level.gff3 |
Chlamydomonas reinhardtii | Chlamydomonas_reinhardtii.v3.1.37.gtf |
Chondrus crispus | Chondrus_crispus.ASM35022v2.37.gtf |
Corchorus capsularis | Corchorus_capsularis.CCACVL1_1.0.37.gtf |
Cucumis sativus | ref_ASM407v2_top_level.gff3 |
Galdieria sulphuraria | Galdieria_sulphuraria.ASM34128v1.37.gtf |
Glycine max | Glycine_max.V1.0.37.gtf |
Hordeum vulgare | Hordeum_vulgare.Hv_IBSC_PGSB_v2.37.gtf |
Leersia perrieri | Leersia_perrieri.Lperr_V1.4.37.gtf |
Malus domestica | ref_MalDomGD1.0_top_level.gff3 |
Manihot esculenta | ref_Manihot_esculenta_v6_top_level.gff3 |
Medicago truncatula | Medicago_truncatula.MedtrA17_4.0.37.gtf |
Musa acuminata | Musa_acuminata.MA1.37.gtf |
Oryza barthii | Oryza_barthii.O.barthii_v1.37.gtf |
Oryza brachyantha | Oryza_brachyantha.Oryza_brachyantha.v1.4b.37.gtf |
Oryza nivara | Oryza_nivara.AWHD00000000.37.gtf |
Oryza punctata | Oryza_punctata.AVCL00000000.37.gtf |
Oryza rufipogon | Oryza_rufipogon.OR_W1943.37.gtf |
Oryza sativa | ref_IRGSP-1.0_top_level.gff3 |
Physcomitrella patens | Physcomitrella_patens.ASM242v1.37.gtf |
Populus trichocarpa | Populus_trichocarpa.JGI2.0.37.gtf |
Prunus persica | Prunus_persica.Prupe1_0.37.gtf |
Selaginella moellendorffii | Selaginella_moellendorffii.v1.0.37.gtf |
Setaria italica | Setaria_italica.JGIv2.0.37.gtf |
Solanum lycopersicum | Solanum_lycopersicum.SL2.50.37.gtf |
Solanum tuberosum | Solanum_tuberosum.SolTub_3.0.37.gtf |
Sorghum bicolor | Sorghum_bicolor.Sorghum_bicolor_v2.37.gtf |
Theobroma cacao | Theobroma_cacao.Theobroma_cacao_20110822.37.gtf |
Trifolium pratense | Trifolium_pratense.Trpr.37.gtf |
Vitis vinifera | Vitis_vinifera.IGGP_12x.37.gtf |
Zea mays | Zea_mays.AGPv4.37.gtf |
Species | Database |
Amborella trichopoda | Ensembl |
Ananas comosus | NCBI |
Arabidopsis lyrata | Ensembl |
Arabidopsis thaliana | Ensembl |
Brachypodium distachyon | Ensembl |
Brassica napus | Ensembl |
Brassica oleracea | Ensembl |
Brassica rapa | Ensembl |
Chenopodium quinoa | NCBI |
Chlamydomonas reinhardtii | Ensembl |
Chondrus crispus | Ensembl |
Corchorus capsularis | Ensembl |
Cucumis sativus | NCBI |
Galdieria sulphuraria | Ensembl |
Glycine max | Ensembl |
Hordeum vulgare | Ensembl |
Leersia perrieri | Ensembl |
Malus domestica | NCBI |
Manihot esculenta | NCBI |
Medicago truncatula | Ensembl |
Musa acuminata | Ensembl |
Oryza barthii | Ensembl |
Oryza brachyantha | Ensembl |
Oryza nivara | Ensembl |
Oryza punctata | Ensembl |
Oryza rufipogon | Ensembl |
Oryza sativa | NCBI |
Physcomitrella patens | Ensembl |
Populus trichocarpa | Ensembl |
Prunus persica | Ensembl |
Selaginella moellendorffii | Ensembl |
Setaria italica | Ensembl |
Solanum lycopersicum | Ensembl |
Solanum tuberosum | Ensembl |
Sorghum bicolor | Ensembl |
Theobroma cacao | Ensembl |
Trifolium pratense | Ensembl |
Vitis vinifera | Ensembl |
Zea mays | Ensembl |
Species | Sequence Read Archive run ID |
Solanum lycopersicum | SRR5932812 |
Solanum lycopersicum | SRR5933152 |
Solanum lycopersicum | SRR4423523 |
Solanum lycopersicum | SRR5933175 |
Solanum lycopersicum | SRR5932970 |
Solanum lycopersicum | SRR5932905 |
Solanum lycopersicum | SRR5932800 |
Solanum lycopersicum | SRR5933037 |
Solanum lycopersicum | SRR5031855 |
Cucumis sativus | SRR5273771 |
Cucumis sativus | SRR6122525 |
Cucumis sativus | SRR3156544 |
Cucumis sativus | SRR3156511 |
Cucumis sativus | SRR3310311 |
Cucumis sativus | SRR3156529 |
Cucumis sativus | SRR3207673 |
Cucumis sativus | SRR3156524 |
Cucumis sativus | SRR3156522 |
Cucumis sativus | SRR3156508 |
Amborella trichopoda | SRR5293276 |
Amborella trichopoda | SRR3309446 |
Amborella trichopoda | SRR5293272 |
Amborella trichopoda | SRR5293275 |
Amborella trichopoda | SRR5293261 |
Amborella trichopoda | SRR3309445 |
Amborella trichopoda | SRR5293264 |
Amborella trichopoda | SRR5293277 |
Amborella trichopoda | SRR5293268 |
Amborella trichopoda | SRR5293262 |
Brachypodium distachyon | SRR3691905 |
Brachypodium distachyon | SRR3691904 |
Brachypodium distachyon | SRR3691908 |
Brachypodium distachyon | SRR5011899 |
Brachypodium distachyon | SRR5515075 |
Brachypodium distachyon | SRR6127925 |
Brachypodium distachyon | SRR3691903 |
Brachypodium distachyon | SRR3691906 |
Brachypodium distachyon | SRR1635409 |
Brachypodium distachyon | SRR1635430 |
Manihot esculenta | SRR3629832 |
Manihot esculenta | SRR1538491 |
Manihot esculenta | SRR2041050 |
Manihot esculenta | SRR5886936 |
Manihot esculenta | SRR5310831 |
Manihot esculenta | SRR3629822 |
Manihot esculenta | SRR1538829 |
Manihot esculenta | SRR1539558 |
Manihot esculenta | SRR4019432 |
Manihot esculenta | SRR1539560 |
Glycine max | SRR3732343 |
Glycine max | SRR3732348 |
Glycine max | SRR3680391 |
Glycine max | SRR830186 |
Glycine max | SRR830207 |
Glycine max | SRR925840 |
Glycine max | SRR3680387 |
Glycine max | SRR3475904 |
Malus domestica | ERR313227 |
Malus domestica | SRR5132038 |
Malus domestica | SRR2906811 |
Malus domestica | SRR2940115 |
Malus domestica | SRR1564463 |
Malus domestica | ERR313236 |
Malus domestica | SRR1660058 |
Malus domestica | ERR313237 |
Malus domestica | SRR2906848 |
Malus domestica | SRR3036781 |
Chenopodium quinoa | SRR5572149 |
Chenopodium quinoa | SRR4300167 |
Chenopodium quinoa | SRR5974432 |
Chenopodium quinoa | SRR5572173 |
Chenopodium quinoa | SRR5572167 |
Chenopodium quinoa | SRR5572152 |
Chenopodium quinoa | SRR4300199 |
Chenopodium quinoa | SRR4300183 |
Chenopodium quinoa | SRR4300203 |
Chenopodium quinoa | SRR4300188 |
Physcomitrella patens | SRR787295 |
Physcomitrella patens | SRR3350450 |
Physcomitrella patens | SRR787291 |
Physcomitrella patens | SRR790623 |
Physcomitrella patens | SRR3350451 |
Physcomitrella patens | SRR790660 |
Physcomitrella patens | SRR3350453 |
Physcomitrella patens | SRR1707403 |
Physcomitrella patens | SRR787292 |
Physcomitrella patens | SRR3350458 |
Corchorus capsularis | SRR2089352 |
Corchorus capsularis | SRR5040292 |
Corchorus capsularis | SRR1867786 |
Corchorus capsularis | SRR5046774 |
Corchorus capsularis | SRR5046775 |
Corchorus capsularis | SRR5046773 |
Corchorus capsularis | SRR5040295 |
Populus trichocarpa | SRR3019764 |
Populus trichocarpa | SRR3019824 |
Populus trichocarpa | SRR3019266 |
Populus trichocarpa | SRR3019883 |
Populus trichocarpa | SRR3019616 |
Populus trichocarpa | SRR3019929 |
Populus trichocarpa | SRR3019621 |
Populus trichocarpa | SRR3019318 |
Populus trichocarpa | SRR3019785 |
Populus trichocarpa | SRR3019588 |
Oryza nivara | SRR1722159 |
Oryza nivara | SRR1722160 |
Oryza nivara | SRR1722161 |
Oryza nivara | SRR1722162 |
Oryza nivara | SRR1171629 |
Oryza nivara | SRR1171630 |
Oryza nivara | SRR1171631 |
Arabidopsis thaliana | ERR1588811 |
Arabidopsis thaliana | SRR1734321 |
Arabidopsis thaliana | SRR5205776 |
Arabidopsis thaliana | SRR1773584 |
Arabidopsis thaliana | SRR5478940 |
Arabidopsis thaliana | SRR3664421 |
Arabidopsis thaliana | SRR3999707 |
Arabidopsis thaliana | ERR1295174 |
Arabidopsis thaliana | SRR4113367 |
Arabidopsis thaliana | SRR2177547 |
Solanum tuberosum | SRR2989645 |
Solanum tuberosum | SRR4032341 |
Solanum tuberosum | SRR2989629 |
Solanum tuberosum | SRR3371838 |
Solanum tuberosum | SRR2932322 |
Solanum tuberosum | SRR6281220 |
Chondrus crispus | ERR2041136 |
Chlamydomonas reinhardtii | SRR5058879 |
Chlamydomonas reinhardtii | SRR5058880 |
Chlamydomonas reinhardtii | ERR1000646 |
Chlamydomonas reinhardtii | ERR1000649 |
Chlamydomonas reinhardtii | ERR1000645 |
Chlamydomonas reinhardtii | SRR5058877 |
Chlamydomonas reinhardtii | SRR402023 |
Chlamydomonas reinhardtii | ERR1000648 |
Chlamydomonas reinhardtii | SRR5058876 |
Chlamydomonas reinhardtii | ERR1000644 |
Setaria italica | SRR3536745 |
Setaria italica | ERR2003564 |
Setaria italica | SRR3536617 |
Setaria italica | SRR3536772 |
Setaria italica | ERR2003561 |
Setaria italica | SRR5748805 |
Setaria italica | ERR2003563 |
Setaria italica | ERR2003556 |
Setaria italica | SRR3536722 |
Setaria italica | ERR2003565 |
Oryza brachyantha | SRR1174794 |
Musa acuminata | SRR4450939 |
Musa acuminata | SRR3732000 |
Musa acuminata | SRR5877238 |
Musa acuminata | SRR5877231 |
Musa acuminata | SRR5877244 |
Musa acuminata | SRR5877227 |
Musa acuminata | SRR5877209 |
Musa acuminata | SRR5877228 |
Musa acuminata | SRR5877230 |
Brassica rapa | SRR3189868 |
Brassica rapa | SRR1238072 |
Brassica rapa | SRR3280638 |
Brassica rapa | SRR3280774 |
Brassica rapa | SRR3280503 |
Brassica rapa | SRR3280621 |
Brassica rapa | SRR3280851 |
Brassica rapa | SRR1238066 |
Brassica rapa | SRR3280502 |
Brassica rapa | SRR6158359 |
Oryza sativa Japonica Group | DRR036954 |
Oryza sativa Japonica Group | SRR1564283 |
Oryza sativa Japonica Group | SRR5925437 |
Oryza sativa Japonica Group | SRR5925537 |
Oryza sativa Japonica Group | SRR5925633 |
Oryza sativa Japonica Group | SRR5925491 |
Oryza sativa Japonica Group | SRR5925506 |
Oryza sativa Japonica Group | ERR2061597 |
Oryza sativa Japonica Group | SRR1985015 |
Oryza sativa Japonica Group | SRR3718442 |
Trifolium pratense | SRR6251246 |
Trifolium pratense | SRR5312540 |
Trifolium pratense | SRR5312541 |
Trifolium pratense | SRR5312542 |
Trifolium pratense | SRR5312543 |
Trifolium pratense | SRR5312544 |
Trifolium pratense | SRR5312545 |
Trifolium pratense | ERR351508 |
Oryza rufipogon | DRR001371 |
Oryza rufipogon | DRR001374 |
Oryza rufipogon | SRR3264876 |
Oryza rufipogon | SRR3264877 |
Oryza rufipogon | SRR3180884 |
Oryza rufipogon | SRR3182795 |
Oryza rufipogon | SRR1220645 |
Oryza rufipogon | SRR1220646 |
Oryza rufipogon | SRR1220647 |
Sorghum bicolor | SRR3938636 |
Sorghum bicolor | SRR3452726 |
Sorghum bicolor | DRR059883 |
Sorghum bicolor | SRR5005259 |
Sorghum bicolor | SRR3087372 |
Sorghum bicolor | SRR3707947 |
Sorghum bicolor | SRR2924913 |
Sorghum bicolor | SRR2924918 |
Sorghum bicolor | SRR1822329 |
Sorghum bicolor | ERR1109876 |
Brassica napus | SRR5905533 |
Brassica napus | SRR2016207 |
Brassica napus | SRR2155562 |
Brassica napus | SRR3355338 |
Brassica napus | SRR1781543 |
Brassica napus | SRR5905541 |
Brassica napus | SRR1793860 |
Brassica napus | SRR1793856 |
Brassica napus | SRR3357562 |
Brassica napus | SRR4242079 |
Selaginella moellendorffii | SRR5499402 |
Oryza punctata | SRR1171005 |
Oryza punctata | SRR1171006 |
Oryza punctata | SRR1171007 |
Hordeum vulgare | ERR1744570 |
Hordeum vulgare | SRR3305232 |
Hordeum vulgare | SRR5452122 |
Hordeum vulgare | SRR5452103 |
Hordeum vulgare | SRR3298414 |
Hordeum vulgare | SRR5452100 |
Hordeum vulgare | SRR3137027 |
Hordeum vulgare | SRR1577845 |
Hordeum vulgare | SRR5452119 |
Galdieria sulphuraria | SRR4450072 |
Galdieria sulphuraria | SRR4450073 |
Galdieria sulphuraria | SRR4450074 |
Galdieria sulphuraria | SRR4450075 |
Galdieria sulphuraria | SRR4450076 |
Galdieria sulphuraria | SRR4450077 |
Galdieria sulphuraria | SRR4450078 |
Galdieria sulphuraria | SRR4450079 |
Galdieria sulphuraria | SRR4450080 |
Brassica oleracea | SRR2296884 |
Brassica oleracea | SRR4333195 |
Brassica oleracea | SRR3473270 |
Brassica oleracea | SRR2177446 |
Brassica oleracea | SRR2296894 |
Brassica oleracea | SRR2296910 |
Brassica oleracea | SRR2296886 |
Brassica oleracea | SRR3473214 |
Brassica oleracea | SRR5643652 |
Arabidopsis lyrata | SRR3020584 |
Arabidopsis lyrata | SRR1868052 |
Arabidopsis lyrata | SRR1868063 |
Arabidopsis lyrata | SRR3020589 |
Arabidopsis lyrata | SRR3993767 |
Arabidopsis lyrata | SRR3020599 |
Arabidopsis lyrata | SRR1868044 |
Arabidopsis lyrata | SRR1868059 |
Arabidopsis lyrata | SRR1868042 |
Arabidopsis lyrata | SRR3993764 |
Oryza sativa | SRR1005276 |
Oryza sativa | SRR2931146 |
Oryza sativa | SRR1117255 |
Oryza sativa | SRR3124595 |
Oryza sativa | SRR2541230 |
Oryza sativa | SRR2072479 |
Oryza sativa | SRR2931502 |
Oryza sativa | SRR2931284 |
Prunus persica | SRR2086172 |
Prunus persica | SRR2290949 |
Prunus persica | SRR1662173 |
Prunus persica | SRR5925640 |
Prunus persica | SRR2290951 |
Prunus persica | SRR2085964 |
Prunus persica | SRR5405089 |
Prunus persica | SRR3658831 |
Ananas comosus | SRR2983907 |
Ananas comosus | SRR5633635 |
Ananas comosus | SRR5633648 |
Ananas comosus | SRR2983912 |
Ananas comosus | SRR2983888 |
Ananas comosus | SRR5633613 |
Ananas comosus | SRR2976829 |
Ananas comosus | SRR2976850 |
Leersia perrieri | SRR1171869 |
Leersia perrieri | SRR1171870 |
Leersia perrieri | SRR1171884 |
Medicago truncatula | ERR2193167 |
Medicago truncatula | SRR1523070 |
Medicago truncatula | ERR2193169 |
Medicago truncatula | SRR3735573 |
Medicago truncatula | SRR949269 |
Medicago truncatula | SRR5217271 |
Medicago truncatula | SRR2060977 |
Medicago truncatula | SRR1523075 |
Medicago truncatula | SRR1979260 |
Medicago truncatula | SRR5217285 |
Zea mays | SRR2558684 |
Zea mays | SRR3085202 |
Zea mays | ERR965605 |
Zea mays | SRR2626637 |
Zea mays | SRR5985056 |
Zea mays | ERR965650 |
Zea mays | SRR1207503 |
Zea mays | ERR1805322 |
Theobroma cacao | SRR747765 |
Theobroma cacao | SRR3217281 |
Theobroma cacao | SRR747762 |
Theobroma cacao | SRR747776 |
Theobroma cacao | SRR3217279 |
Theobroma cacao | SRR747779 |
Theobroma cacao | SRR3217277 |
Theobroma cacao | SRR747774 |
Theobroma cacao | SRR3217282 |
Theobroma cacao | SRR3217319 |
Oryza barthii | SRR1722231 |
Oryza barthii | SRR1722290 |
Oryza barthii | SRR1722291 |
Oryza barthii | SRR1722292 |
Oryza barthii | SRR1170762 |
Oryza barthii | SRR1170742 |
Oryza barthii | SRR1170744 |
Vitis vinifera | SRR3069676 |
Vitis vinifera | SRR3288880 |
Vitis vinifera | SRR3106046 |
Vitis vinifera | SRR5944323 |
Vitis vinifera | SRR3046824 |
Vitis vinifera | SRR3288867 |
Vitis vinifera | SRR3056886 |
Vitis vinifera | SRR2081021 |
Vitis vinifera | SRR5984214 |
Vitis vinifera | SRR3938631 |