Common name: African rice
Latin name: Oryza glaberrima
Genome assembly: AGI1.1
All retrocopies: 69
Parental genes: 56

Summary: Number of retrocopies :
Conserved ORF: 53 ORF 16 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_ogla_1 62.61 % 89.02 % ORF
2. retro_ogla_2 55.48 % 96.70 % ORF
3. retro_ogla_3 60.90 % 91.32 % ORF
4. retro_ogla_4 69.11 % 71.35 % ORF
5. retro_ogla_5 79.83 % 86.94 % ORF
6. retro_ogla_6 56.67 % 73.87 % ORF
7. retro_ogla_7 72.24 % 89.58 % ORF
8. retro_ogla_8 71.49 % 87.06 % ORF
9. retro_ogla_9 68.75 % 56.51 % ORF
10. retro_ogla_10 72.73 % 100.00 % ORF
11. retro_ogla_11 76.57 % 91.39 % ORF
12. retro_ogla_12 68.77 % 70.00 % ORF
13. retro_ogla_13 71.15 % 96.99 % ORF
14. retro_ogla_14 68.73 % 95.42 % ORF
15. retro_ogla_15 54.25 % 60.44 % ORF
16. retro_ogla_16 69.30 % 60.15 % ORF
17. retro_ogla_17 65.15 % 75.94 % ORF
18. retro_ogla_18 90.79 % 99.35 % ORF
19. retro_ogla_19 94.66 % 78.24 % ORF
20. retro_ogla_20 51.14 % 62.41 % ORF
21. retro_ogla_21 85.94 % 99.41 % ORF
22. retro_ogla_22 79.20 % 94.06 % ORF
23. retro_ogla_23 59.60 % 88.06 % ORF
24. retro_ogla_24 66.23 % 97.39 % ORF
25. retro_ogla_25 53.97 % 96.32 % ORF
26. retro_ogla_26 77.74 % 60.99 % ORF
27. retro_ogla_27 51.06 % 51.01 % ORF
28. retro_ogla_28 76.40 % 99.16 % ORF
29. retro_ogla_29 60.25 % 93.93 % ORF
30. retro_ogla_30 71.06 % 93.96 % ORF
31. retro_ogla_31 92.12 % 65.84 % ORF
32. retro_ogla_32 53.20 % 85.86 % ORF
33. retro_ogla_33 52.65 % 89.29 % ORF
34. retro_ogla_34 56.14 % 78.27 % ORF
35. retro_ogla_35 51.09 % 96.48 % ORF
36. retro_ogla_36 59.26 % 69.71 % ORF
37. retro_ogla_37 70.39 % 97.16 % ORF
38. retro_ogla_38 61.81 % 77.58 % ORF
39. retro_ogla_39 69.06 % 90.42 % ORF
40. retro_ogla_40 66.77 % 91.15 % ORF
41. retro_ogla_41 74.56 % 88.44 % ORF
42. retro_ogla_42 73.51 % 100.00 % ORF
43. retro_ogla_43 72.99 % 54.89 % ORF
44. retro_ogla_44 52.64 % 91.41 % ORF
45. retro_ogla_45 70.16 % 94.33 % ORF
46. retro_ogla_47 68.72 % 78.60 % ORF
47. retro_ogla_48 81.25 % 57.81 % ORF
48. retro_ogla_49 82.86 % 54.69 % ORF
49. retro_ogla_50 60.00 % 67.19 % ORF
50. retro_ogla_52 60.32 % 55.99 % ORF
51. retro_ogla_53 76.92 % 67.19 % ORF
52. retro_ogla_54 52.05 % 96.35 % ORF
53. retro_ogla_55 83.17 % 52.60 % ORF
54. retro_ogla_56 83.17 % 52.60 % ORF
55. retro_ogla_57 78.18 % 56.77 % ORF
56. retro_ogla_58 72.97 % 56.77 % ORF
57. retro_ogla_60 82.84 % 57.25 % ORF
58. retro_ogla_61 67.82 % 92.55 % ORF
59. retro_ogla_64 65.71 % 90.43 % ORF
60. retro_ogla_66 84.21 % 63.32 % ORF
61. retro_ogla_67 60.00 % 67.19 % ORF
62. retro_ogla_68 81.19 % 52.60 % ORF
63. retro_ogla_69 80.20 % 52.60 % ORF
64. retro_ogla_71 74.82 % 77.84 % ORF
65. retro_ogla_72 81.98 % 57.81 % ORF
66. retro_ogla_73 75.43 % 71.16 % ORF
67. retro_ogla_74 91.85 % 76.70 % ORF
68. retro_ogla_75 56.90 % 66.67 % ORF
69. retro_ogla_76 61.63 % 57.97 % ORF
# Ensembl ID Symbol Description
1. ORGLA04G0104200
2. ORGLA03G0415200
3. ORGLA01G0385600
4. ORGLA04G0001200
5. ORGLA09G0122500
6. ORGLA03G0313900 oligopeptide transporter [Source:Projected from Arabidopsis thaliana (AT4G16370) TAIR;Acc:AT4G16370]
7. ORGLA05G0247800 Mov34/MPN/PAD-1 family protein [Source:Projected from Arabidopsis thaliana (AT5G23540) TAIR;Acc:AT5G23540]
8. ORGLA08G0040000
9. ORGLA01G0215900
10. ORGLA01G0218200
11. ORGLA11G0115300
12. ORGLA01G0055400
13. ORGLA01G0381200
14. ORGLA01G0334700
15. ORGLA05G0188400
16. ORGLA08G0005800
17. ORGLA08G0098600
18. ORGLA05G0012000
19. ORGLA06G0255900
20. ORGLA01G0161200
21. ORGLA06G0191700
22. ORGLA02G0127200 regulatory particle triple-A ATPase 3 [Source:Projected from Arabidopsis thaliana (AT5G58290) TAIR;Acc:AT5G58290]
23. ORGLA04G0062900
24. ORGLA02G0273700
25. ORGLA08G0109300
26. ORGLA07G0020300
27. ORGLA04G0185500
28. ORGLA08G0175000
29. ORGLA07G0032400
30. ORGLA05G0075600
31. ORGLA03G0142400 ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:I1PAM8]
32. ORGLA01G0220100 ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:I1NQR1]
33. ORGLA05G0165000
34. ORGLA03G0409900
35. ORGLA05G0022200
36. ORGLA11G0022300
37. ORGLA09G0073400 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:Projected from Arabidopsis thaliana (AT2G38740) TAIR;Acc:AT2G38740]
38. ORGLA11G0052300
39. ORGLA07G0149800
40. ORGLA12G0173300
41. ORGLA06G0183600
42. ORGLA04G0190200
43. ORGLA01G0325500
44. ORGLA10G0133100
45. ORGLA03G0005200
46. ORGLA03G0092500
47. ORGLA08G0054200 Pectinesterase [Source:UniProtKB/TrEMBL;Acc:I1QGJ1]
48. ORGLA03G0062000
49. ORGLA01G0303100
50. ORGLA01G0092400
51. ORGLA02G0200400
52. ORGLA05G0173200
53. ORGLA03G0209400
54. ORGLA05G0009300
55. ORGLA05G0189300
56. ORGLA03G0127300
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)