Common name: Platyfish
Latin name: Xiphophorus maculatus
Genome assembly: Xipmac4.4.2
All retrocopies: 25
Parental genes: 25

Summary: Number of retrocopies :
Conserved ORF: 22 ORF 3 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_xmac_1 66.43 % 64.59 % ORF
2. retro_xmac_2 53.36 % 82.88 % ORF
3. retro_xmac_3 60.44 % 77.82 % ORF
4. retro_xmac_4 59.66 % 97.02 % ORF
5. retro_xmac_5 71.04 % 99.84 % ORF
6. retro_xmac_6 100.00 % 59.38 % ORF
7. retro_xmac_7 55.40 % 74.15 % ORF
8. retro_xmac_8 81.19 % 98.04 % ORF
9. retro_xmac_9 67.19 % 96.96 % ORF
10. retro_xmac_10 73.15 % 76.76 % ORF
11. retro_xmac_11 72.32 % 100.00 % ORF
12. retro_xmac_12 59.32 % 92.08 % ORF
13. retro_xmac_13 77.89 % 90.91 % ORF
14. retro_xmac_14 71.31 % 96.78 % ORF
15. retro_xmac_15 52.29 % 86.25 % ORF
16. retro_xmac_16 55.81 % 76.05 % ORF
17. retro_xmac_17 75.69 % 62.46 % ORF
18. retro_xmac_18 59.87 % 81.04 % ORF
19. retro_xmac_19 65.04 % 96.38 % ORF
20. retro_xmac_20 84.37 % 96.60 % ORF
21. retro_xmac_21 74.64 % 60.35 % ORF
22. retro_xmac_22 59.04 % 96.70 % ORF
23. retro_xmac_24 65.81 % 91.92 % ORF
24. retro_xmac_25 52.51 % 62.63 % ORF
25. retro_xmac_27 70.21 % 80.46 % ORF
# Ensembl ID Symbol Description
1. ENSXMAG00000017297 RHO (1 of 2) rhodopsin [Source:HGNC Symbol;Acc:10012]
2. ENSXMAG00000007886 tpst1l tyrosylprotein sulfotransferase 1, like [Source:ZFIN;Acc:ZDB-GENE-040316-1]
3. ENSXMAG00000003911 UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]
4. ENSXMAG00000007929 pspc1 paraspeckle component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9530]
5. ENSXMAG00000008103 rhoad ras homolog gene family, member Ad [Source:ZFIN;Acc:ZDB-GENE-040718-144]
6. ENSXMAG00000014093 elfn1b extracellular leucine-rich repeat and fibronectin type III domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-080327-21]
7. ENSXMAG00000015297 fem1c fem-1 homolog c (C.elegans) [Source:ZFIN;Acc:ZDB-GENE-031008-3]
8. ENSXMAG00000003895
9. ENSXMAG00000002259 inip (1 of 2) ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
10. ENSXMAG00000012731 SSTR5 (2 of 2) somatostatin receptor 5 [Source:HGNC Symbol;Acc:11334]
11. ENSXMAG00000015247 aplnra apelin receptor a [Source:ZFIN;Acc:ZDB-GENE-060929-512]
12. ENSXMAG00000018521 B3GNT3 (2 of 2) UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Source:HGNC Symbol;Acc:13528]
13. ENSXMAG00000016407 atp1b1a ATPase, Na+/K+ transporting, beta 1a polypeptide [Source:ZFIN;Acc:ZDB-GENE-001127-3]
14. ENSXMAG00000017494 kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 [Source:ZFIN;Acc:ZDB-GENE-060308-1]
15. ENSXMAG00000008242 npy2rl neuropeptide Y receptor Y2, like [Source:ZFIN;Acc:ZDB-GENE-111115-4]
16. ENSXMAG00000006050 eef1b2 (2 of 2) eukaryotic translation elongation factor 1 beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7310]
17. ENSXMAG00000001602 hspa8 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. ENSXMAG00000000439 hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
19. ENSXMAG00000013667
20. ENSXMAG00000019316 LINGO3 (2 of 2) leucine rich repeat and Ig domain containing 3 [Source:HGNC Symbol;Acc:21206]
21. ENSXMAG00000015929 OPN4 (2 of 3) opsin 4 [Source:HGNC Symbol;Acc:14449]
22. ENSXMAG00000000370 npy8ar neuropeptide Y receptor Y8a [Source:ZFIN;Acc:ZDB-GENE-990415-175]
23. ENSXMAG00000007675 march5 membrane-associated ring finger (C3HC4) 5 [Source:ZFIN;Acc:ZDB-GENE-070424-47]
24. ENSXMAG00000002735 lrrc30 leucine rich repeat containing 30 [Source:ZFIN;Acc:ZDB-GENE-050506-25]
25. ENSXMAG00000002730 SLC5A3 (2 of 2) solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 [Source:HGNC Symbol;Acc:11038]
Retrogenes FASTA BED
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Parental genes FASTA BED
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