Parental gene:

HDHD1, ENSACAG00000004616

Aliases:None
Description:haloacid dehalogenase-like hydrolase domain containing 1 [Source:HGNC Symbol;Acc:16818]
Organism:Anole lizard (Anolis carolinensis)
Coordinates:3:116947604..117171494(-)


>ENSACAG00000004616
ATAATAGCCCTCCTCCCTCTTCCAAGAGTTCTCATGGGCATCACTGCATTTTCCTCAGATACTGAACGTCTTTACACAGT
TGTGTACCAAGAAATCTGTAAACGGTATGGAAAATCCTATACCTGGGATGTGAAATCCTTAGCAATGGGCAAAAAAGCAT
TAGAGGGAGCAAAGATCATTCGAGATGCCCTGGATCTTCCATTAACCAAAGAAGAGCTACTGCATGAATGTCAAATTAAA
CAGGAGAAACTGTTTCCCACAGCAGCACTCATGCCAGGAGTTGAAAAACTAATCCGCCATTTACATCAACACAACATACC
CATAGCTGTTGCCACCAGCTCATCCCGAGTGACATTTGAAATGAAAACTAGTCGACACAAAGACTTCTTCAATTTATTTC
ATCATATTGTGTTGGGAGATGACCCTGAAGTGAAGGATGGCAAGCCACAGCCTGATGTGTTTATAGTTTGTGCGAAAAGA
TTTAATCCACCACCA

Library Parental gene expression (RPM)
SRP009831_adrenal 2 .33 RPM
SRP009831_brain 2 .98 RPM
SRP009831_dewlap 22 .74 RPM
SRP009831_embryo 8 .06 RPM
SRP009831_heart 5 .81 RPM
SRP009831_liver 3 .15 RPM
SRP009831_lung 5 .19 RPM
SRP009831_ovary 28 .57 RPM
SRP009831_skeletal_muscle 7 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001318 ortholog_one2one 5 retrogenes
retro_chof_1597, retro_chof_1855, retro_chof_1883, retro_chof_2136, retro_chof_2168,
Homo sapiens ENSG00000130021 ortholog_one2one 2 retrogenes
retro_hsap_2469, retro_hsap_454,
Gorilla gorilla ENSGGOG00000004425 ortholog_one2one 1 retrogene
retro_ggor_1537,
Microcebus murinus ENSMICG00000017082 ortholog_one2one 1 retrogene
retro_mmur_1321,
Macaca mulatta ENSMMUG00000017377 ortholog_one2many 1 retrogene
retro_mmul_244,
Monodelphis domestica ENSMODG00000017505 ortholog_one2many 2 retrogenes
retro_mdom_1374, retro_mdom_52,
Pongo abelii ENSPPYG00000020105 ortholog_one2one 2 retrogenes
retro_pabe_1837, retro_pabe_280,
Pteropus vampyrus ENSPVAG00000011149 ortholog_one2one 1 retrogene
retro_pvam_1165,
Tarsius syrichta ENSTSYG00000013238 ortholog_one2one 4 retrogenes
retro_tsyr_2013, retro_tsyr_345, retro_tsyr_542, retro_tsyr_931,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_48 53.46 96.36
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSACAG00000004616 retrocopies