Parental gene:

PRPF4, ENSBTAG00000004571

Aliases:None
Description:U4/U6 small nuclear ribonucleoprotein Prp4 [Source:UniProtKB/Swiss-Prot;Acc:Q3MHE2]
Organism:Cow (Bos taurus)
Coordinates:8:104218992..104239715(+)


>ENSBTAG00000004571
ATGGCTTCCACACGACCCTCCTCCACGGCAACCAAAACTAAGGCACCAGATGACTTGGTGGCTCCTGTTGTGAAGAAACC
ACACATCTATTATGGAAGTTTGGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAATCTGGGCTTTTGGGAAAAGAAG
GACTCAAAGCAGGAATTGAAGCAGGAAACATTAACATAACCTCTGGAGAAGTGTTTGAAATTGAAGAGCACATCAGTGAG
AGACAGGCTGAAGTGTTAGCAGAGTTTGAGAGAAGGAAGCGAGCCCGGCAAATCAACGTTTCCACAGATGACTCAGAGGT
CAAGGCTTGCCTTAGAGCTTTGGGGGAACCCATCACACTTTTTGGAGAAGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAA
ATATTCTCTCAGTGGTCGGTACTGATGCCTTAAAAAAGACCAAAAAAGATGATGAGAAATCAAAGAAGTCCAAAGAAGAG
TATCAGCAGACCTGGTACCATGAAGGACCACACAGCCTGAAGGTTGCTAGACTGTGGATTGCTAATTACTCACTGCCCAG
GGCAATGAAACGCTTAGAAGAGGCCCGTCTTCATAAAGAGATTCCTGAGACAACTAGAACCTCCCAGATGCAAGAGCTGC
ACAAATCTCTCCGATCTTTGAATAATTTCTGCAGTCAGATTGGGGATGATCGTCCTATCTCCTACTGTCACTTTAGTCCC
AATTCCAAAATGCTGGCCACAGCCTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCCGATTGCAACCTCCTTCACAC
TCTTCGAGGCCATAACACAAATGTGGGAGCGATCGTATTCCATCCCAAATCCACAGTCTCCTTGGACCAAAAAGACGTTA
ATCTGGCCTCTTGTGCTGCTGACGGTTCTGTGAAGCTGTGGAGCCTTGACAGTGATGAGCCTGTGGCAGACATTGAAGGG
CACACCGTGCGCGTGGCCCGTGTGACGTGGCATCCATCAGGGCGCTTCTTGGGTACCACCTGCTATGACCGATCATGGCG
TTTATGGGATTTGGAAGCTCAAGAGGAGATCCTGCATCAGGAGGGCCACAGCATGGGTGTGTATGACATTGCCTTCCATC
AAGATGGCTCTTTGGCTGGCACTGGGGGACTGGATGCATTTGGTCGAGTTTGGGACCTGCGCACAGGACGTTGTATCATG
TTCCTAGAAGGTCACCTGAAGGAAATATATGGAATAAATTTCTCCCCCAATGGCTACCACATTGCAACTGGCAGTGGCGA
CAACACCTGCAAAGTGTGGGACCTCCGACAGCGACGTTGTGTCTACACCATTCCTGCCCATCAGAACTTAGTGACAGGTG
TCAAGTTCGAGCCTATCCATGGGAATTTCTTGCTCACTGGTGCCTATGATAACACAGCCAAGATCTGGACTCACCCAGGC
TGGTCCCCTCTGAAGACTCTGGCCGGCCACGAAGGCAAAGTGATGGGCCTAGACATTTCTTCCGATGGGCAGCTCATAGC
CACTTGCTCCTATGACAGGACCTTCAAGCTCTGGATGGCTGAATAG

Library Parental gene expression (RPM)
SRP017611_brain 21 .79 RPM
SRP017611_kidney 37 .76 RPM
SRP017611_liver 16 .08 RPM
ERP005899_muscle 22 .91 RPM
ERP005899_liver 22 .78 RPM
SRP030211_testis 37 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000047031 other_paralog 1 retrogene
retro_btau_299,
Cavia porcellus ENSCPOG00000010747 ortholog_one2one 2 retrogenes
retro_cpor_1531, retro_cpor_548,
Myotis lucifugus ENSMLUG00000015309 ortholog_one2many 1 retrogene
retro_mluc_77,
Otolemur garnettii ENSOGAG00000007802 ortholog_one2one 1 retrogene
retro_ogar_2854,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1341 86.96 66.03
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Download FASTA sequences of all ENSBTAG00000004571 retrocopies