Parental gene:

PSMD4, ENSCAFG00000012565

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Source:HGNC Symbol;Acc:9561]
Organism:Dog (Canis familiaris)
Coordinates:17:60306253..60314130(+)


>ENSCAFG00000012565
ATGGTGTTGGAAAGCACTATGGTTTGTGTGGACAACAGTGAGTATATGCGGAATGGGGACTTCTTACCCACCCGGCTGCA
GGCCCAACAAGATGCTGTCAACATAGTTTGTCACTCTAAGACCCGCAGCAACCCTGAAAACAACGTGGGCCTCATCACAC
TGGCCAATGACTGTGAAGTGCTGACCACACTCACCCCTGACACTGGCCGCATTCTTTCCAAGCTCCACACTGTGCAACCC
AAGGGCAAGATCACCTTCTGCACTGGTATCCGCGTGGCTCATCTGGCTCTGAAGCACAGGCAGGGCAAGAATCACAAGAT
GCGCATTATTGCCTTCGTGGGAAGCCCCGTGGAGGACAACGAGAAGGATCTGGTGAAACTGGCTAAACGTCTCAAGAAGG
AGAAAGTAAATGTTGACATTATCAACTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACAGCCTTTGTAAACACATTG
AATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCCCCTGGGCCCAGCTTGGCTGATGCGCTCATCAGTTCTCC
AATTCTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCTAGTGACTTTGAATTCGGAGTGGATCCCAGTGCTGATC
CCGAGCTGGCCCTGGCCCTCCGTGTTTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCCCGGCGGGCAGCTGCA
GCCTCTGCTGCTGAGGCGGGGATTGCTACAGCTGGGGCCGAAGACTCCGATGATGCCCTGCTGAAGATGACCATCAGCCA
GCAGGAGTTTGGCCGCAGCGGGCTCCCCGACCTAAGCAGTATGACTGAGGAGGAGCAGATTGCCTATGCCATGCAGATGT
CCCTGCAGGGTGCAGAGTTCGGCCAGGCAGAATCAGCTGACATCGATGCCAGTTCAGCCATGGACACATCTGAGCCCGCC
AAGGAGGAGGATGATTATGATGTGATGCAGGACCCTGAGTTCCTTCAGAGCGTCCTGGAGAACCTTCCAGGCGTGGATCC
CAACAACGAAGCTATTCGAAATGCCATGGGCTCTCTGGCCTCGCAGGCCAACAAGGATGGCAAGAAGGACAAAAAGGAGG
AAGATAAGAAATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 70 .31 RPM
SRP017611_brain 41 .36 RPM
SRP017611_kidney 68 .41 RPM
SRP017611_liver 27 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007357 ortholog_one2one 1 retrogene
retro_cjac_2808,
Dasypus novemcinctus ENSDNOG00000007446 ortholog_one2one 1 retrogene
retro_dnov_1556,
Homo sapiens ENSG00000159352 ortholog_one2one 1 retrogene
retro_hsap_2531,
Nomascus leucogenys ENSNLEG00000010139 ortholog_one2one 1 retrogene
retro_nleu_1450,
Pongo abelii ENSPPYG00000000871 ortholog_one2one 1 retrogene
retro_pabe_1862,
Pan troglodytes ENSPTRG00000013893 ortholog_one2one 1 retrogene
retro_ptro_1474,
Sus scrofa ENSSSCG00000006628 ortholog_one2one 1 retrogene
retro_sscr_981,
Tupaia belangeri ENSTBEG00000016911 ortholog_one2one 1 retrogene
retro_tbel_238,
Tursiops truncatus ENSTTRG00000007019 ortholog_one2one 1 retrogene
retro_ttru_903,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_591 82.51 95.76
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Download FASTA sequences of all ENSCAFG00000012565 retrocopies