Parental gene:

TPGS2, ENSCAFG00000017766

Aliases:None
Description:tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]
Organism:Dog (Canis familiaris)
Coordinates:7:53398762..53466467(+)


>ENSCAFG00000017766
ATGGAGGAGACGCCGCCCCCGGGCTGCAGCAAGCCGCACCTGGAGAAGCTGACCCTGGGGATCACCCGCATCCTCGAATC
TTCCCCAGGTGTGACAGAGGTGACTATCATAGAAAAACCACCTGCTGAACGTCATATGATTTCTTCATGGGAACAAAAAA
ATAACTGCATGCTACCTGAGGATGTGAAGAATTTTTACCTGATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTG
GATGAGCACACCATTCCATTGGGCAGCATGGCAATTAACAGCATCTCAAAACTGACTCAACTCAACCAGTCTTCCGTGTA
CTCACTCCCTAATGCACCAACTCTGGCAGACCTGGAGGATGATACACTTGAAGCCAGTGAGAACCAGCCAGAGAAGCCTC
ACTTTGATTCTCGCAGTGTGATATTTGAGCTGGATTCTTGCAATGGGAATGGGAAGGTTTGCCTTGTCTACAAAACAGGG
AAACCAGCATTAGCACAAGACACTGAGATCTGGTTCCTGGACAGAGCATTATACTGGCATTTTCTCACAGATACATTTAC
CGCTTACTATCGCCTGCTCATCACGCACCTGGGCCTGCCACAGTGGCAGTATGCCTTCACCAGCTATGGCATTAGCCCCC
AAGCCAAGCAATGGTTCAACATGTATAAACCCATCACCTACAACACAAACCTGCTTGCAGAAGAGACCAACTCCTTCGTG
AACAAGCTGGATCCCAGCAGAGTATTCAAGAGCAAGAACAAGACATTAATCCCCAAAAAGAAAGGGCCTGTCCAGCCTCC
AGGTGGCCAGAAAGGGCCCTCAGGTCCTCCCTCCACTTCTAAATCCTCTTCTAGCCCTGGCAACCCTGTCCGGAAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 26 .21 RPM
SRP017611_brain 18 .97 RPM
SRP017611_kidney 23 .97 RPM
SRP017611_liver 10 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007960 ortholog_one2one 1 retrogene
retro_chof_1642,
Erinaceus europaeus ENSEEUG00000005257 ortholog_one2one 3 retrogenes
retro_eeur_208, retro_eeur_324, retro_eeur_516,
Myotis lucifugus ENSMLUG00000001739 ortholog_one2one 1 retrogene
retro_mluc_1194,
Mustela putorius furo ENSMPUG00000001097 ortholog_one2one 2 retrogenes
retro_mputfur_1622, retro_mputfur_507,
Mus musculus ENSMUSG00000024269 ortholog_one2one 1 retrogene
retro_mmus_2648,
Otolemur garnettii ENSOGAG00000008218 ortholog_one2one 1 retrogene
retro_ogar_686,
Rattus norvegicus ENSRNOG00000014957 ortholog_one2one 1 retrogene
retro_rnor_2961,
Sus scrofa ENSSSCG00000026953 ortholog_one2one 1 retrogene
retro_sscr_590,
Tarsius syrichta ENSTSYG00000005299 ortholog_one2one 2 retrogenes
retro_tsyr_1161, retro_tsyr_512,
Tursiops truncatus ENSTTRG00000007153 ortholog_one2one 1 retrogene
retro_ttru_1112,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_355 79.59 98.63
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2. retro_cfam_457 92.41 99.32
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3. retro_cfam_626 74.24 77.40
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Download FASTA sequences of all ENSCAFG00000017766 retrocopies