Parental gene: | COLEC12, ENSCJAG00000000146 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 13:57694082..57883546(+) |
>ENSCJAG00000000146
ATGAAAGACGACTTCGCAGAGGAGGAGGAGGTGCAGTCCTTCGGTTACAAGCGGTTTGGTATTCAGGAAGGAACACAATG
TACCAAATGTAAAAATAACTGGGCACTGAAGTTTTCTATCATATTATTATACATTTTGTGTGCCTTGCTAACAATCACAG
TAGCCATTTTGGGATATAAAGTTGTAGAGAAAATGGATAATGTCACAGGTGGCATGGAGACATCTCGCCAAACCTATGAT
GACAAGCTCACAGCAGTGGAAAGTGACCTGAAAAAATTAGGTGACCAAACTGGGAAGAAAGCTATTAGCACCAACTCAGA
ACTCTCTACCTTCAGATCAGACATTCTAGATCTCCGTCAGCAACTTCGTGAGATTACAGAAAAAACCAGCAAGAACAAGG
ATACGCTGGAGAAGTTACAGGCAAGCGGGGATGCACTGATGGACAGGCAGAGTCAACTAAAAGAAACTTTGGAGAATAAC
TCTTTCCTTATCACCACTGTAAACAAAACCCTCCAGGCGTACAATGGCTATGTCACGAATCTGCAGCAGGATACTAGTGT
GCTCCAGGGTAATCTGCAGAACCAAATGTATTCTCATAACGTGGTCATCATGAACCTCAATAACCTGAACCTGACCCAGG
TACAGCAGAGGAACCTCATCACAAATCTGCAGCGGTCTGTGGATGACACAAGCCAGGCTATCCAGCGAATCAAGAATGAC
TTTCAAAATCTGCAGCAGGTTTTTCTTCAAGCCAAGAAGGATACAGATTGGCTGAAGGAGAAAGTGCAAAGCTTGCAGAT
GCTGGCTACCAATAATTCTGCTTTGGCCAAAGCCAACAATGACACCCTGGAGGATATGAACAGCCAGCTCAACTCATTTA
CAGGTCAGATGGAGAACATCACCACTATCTCTCAGGCCAATGAGCAGAATCTGAAAGACCTGCAGGACTTACACAAGGAC
GCAGAGAATAGAACAGCCATCAAGTTCAACCAACTGGAGGAACGCTTCCAGCTCTTTGAGACGGATATTGTGAATATCAT
TAGCAATATCAGTTACACAGCCCACCACCTGCGGACGCTGACCAGCAATCTGAATGAAGTCAGGACCACTTGCACGGATA
CGCTAACCAAACACACGGATGATTTGACCTCCTTGAATAATACCCTGGCCAACATCCGTTTGGATTCTGTTTCTCTCAGG
ATGCAACAAGATTTGATGAGGTCGAGGTTAGACACTGAAGTGGCCAACTTATCAGTGATTATGGAAGAAATGAAGCTAGT
AGACTCCAAACATGGTCAGCTCATCAAGAATTTTACAATACTACAAGGTCCACCTGGCCCCAGGGGTCCAAAAGGTGACA
GAGGATCCCAGGGACCCCCTGGTCCAACTGGCAACAAGGGACAGAAAGGAGAGAAGGGGGAGCCTGGACCACCTGGCCCT
GCGGGTGAGAGAGGCCCAATGGGACCAGTTGGTCCCCCTGGAGAACGTGGCAGCAAAGGCTCTAAAGGCTCCCAGGGACC
TAAAGGCTCCCGTGGTTCCCCCGGGAAGCCTGGCCCTCAGGGCCCCAGTGGGGACCCAGGCCCCCCAGGCCCACCAGGCA
AAGAAGGACTCCCCGGCCCCCATGGCCCTCCTGGATTCCAGGGACTACAGGGCACCGTGGGGGAGCCTGGGGTGCCTGGA
CCTCGGGGACTTCCAGGTTTGCCTGGGGTACCAGGCATGCCAGGACCCAAGGGTCCCCCCGGTCCCCCTGGCCCTTCAGG
AGCAGTGGTGCCCCTGGCCCTGCAGAATGAGCCCACCCCAGCACCGGAGGATAATGGCTGCCCGCCTCACTGGAAGAACT
TCACAGACAAATGCTACTATTTTTCTGTTGAGAAAGAAATTTTTGAGGACGCAAAGCTTTTCTGTGAAGACAAGTCTTCA
CATCTTGTTTTCATAAACACTAGAGAAGAACAGCAATGGATAAAAAAACAGATGGTAGGGAGAGAGAGCCACTGGATCGG
CCTCACAGACTCGGAGAATGAAAATGAATGGAAGTGGCTGGATGGGACATCTCCAGACTACAAAAATTGGAAAGCTGGAC
AGCCGGATAACTGGGGTCATGGCCACGGGCCAGGAGAAGACTGTGCTGGGTTGATTTATGCTGGGCAGTGGAACGATTTC
CAGTGTGAAGACATCAATAACTTCATTTGCGAAAAAGACAGGGAGACAGTACTGTCATCTGCATTATAA
ATGAAAGACGACTTCGCAGAGGAGGAGGAGGTGCAGTCCTTCGGTTACAAGCGGTTTGGTATTCAGGAAGGAACACAATG
TACCAAATGTAAAAATAACTGGGCACTGAAGTTTTCTATCATATTATTATACATTTTGTGTGCCTTGCTAACAATCACAG
TAGCCATTTTGGGATATAAAGTTGTAGAGAAAATGGATAATGTCACAGGTGGCATGGAGACATCTCGCCAAACCTATGAT
GACAAGCTCACAGCAGTGGAAAGTGACCTGAAAAAATTAGGTGACCAAACTGGGAAGAAAGCTATTAGCACCAACTCAGA
ACTCTCTACCTTCAGATCAGACATTCTAGATCTCCGTCAGCAACTTCGTGAGATTACAGAAAAAACCAGCAAGAACAAGG
ATACGCTGGAGAAGTTACAGGCAAGCGGGGATGCACTGATGGACAGGCAGAGTCAACTAAAAGAAACTTTGGAGAATAAC
TCTTTCCTTATCACCACTGTAAACAAAACCCTCCAGGCGTACAATGGCTATGTCACGAATCTGCAGCAGGATACTAGTGT
GCTCCAGGGTAATCTGCAGAACCAAATGTATTCTCATAACGTGGTCATCATGAACCTCAATAACCTGAACCTGACCCAGG
TACAGCAGAGGAACCTCATCACAAATCTGCAGCGGTCTGTGGATGACACAAGCCAGGCTATCCAGCGAATCAAGAATGAC
TTTCAAAATCTGCAGCAGGTTTTTCTTCAAGCCAAGAAGGATACAGATTGGCTGAAGGAGAAAGTGCAAAGCTTGCAGAT
GCTGGCTACCAATAATTCTGCTTTGGCCAAAGCCAACAATGACACCCTGGAGGATATGAACAGCCAGCTCAACTCATTTA
CAGGTCAGATGGAGAACATCACCACTATCTCTCAGGCCAATGAGCAGAATCTGAAAGACCTGCAGGACTTACACAAGGAC
GCAGAGAATAGAACAGCCATCAAGTTCAACCAACTGGAGGAACGCTTCCAGCTCTTTGAGACGGATATTGTGAATATCAT
TAGCAATATCAGTTACACAGCCCACCACCTGCGGACGCTGACCAGCAATCTGAATGAAGTCAGGACCACTTGCACGGATA
CGCTAACCAAACACACGGATGATTTGACCTCCTTGAATAATACCCTGGCCAACATCCGTTTGGATTCTGTTTCTCTCAGG
ATGCAACAAGATTTGATGAGGTCGAGGTTAGACACTGAAGTGGCCAACTTATCAGTGATTATGGAAGAAATGAAGCTAGT
AGACTCCAAACATGGTCAGCTCATCAAGAATTTTACAATACTACAAGGTCCACCTGGCCCCAGGGGTCCAAAAGGTGACA
GAGGATCCCAGGGACCCCCTGGTCCAACTGGCAACAAGGGACAGAAAGGAGAGAAGGGGGAGCCTGGACCACCTGGCCCT
GCGGGTGAGAGAGGCCCAATGGGACCAGTTGGTCCCCCTGGAGAACGTGGCAGCAAAGGCTCTAAAGGCTCCCAGGGACC
TAAAGGCTCCCGTGGTTCCCCCGGGAAGCCTGGCCCTCAGGGCCCCAGTGGGGACCCAGGCCCCCCAGGCCCACCAGGCA
AAGAAGGACTCCCCGGCCCCCATGGCCCTCCTGGATTCCAGGGACTACAGGGCACCGTGGGGGAGCCTGGGGTGCCTGGA
CCTCGGGGACTTCCAGGTTTGCCTGGGGTACCAGGCATGCCAGGACCCAAGGGTCCCCCCGGTCCCCCTGGCCCTTCAGG
AGCAGTGGTGCCCCTGGCCCTGCAGAATGAGCCCACCCCAGCACCGGAGGATAATGGCTGCCCGCCTCACTGGAAGAACT
TCACAGACAAATGCTACTATTTTTCTGTTGAGAAAGAAATTTTTGAGGACGCAAAGCTTTTCTGTGAAGACAAGTCTTCA
CATCTTGTTTTCATAAACACTAGAGAAGAACAGCAATGGATAAAAAAACAGATGGTAGGGAGAGAGAGCCACTGGATCGG
CCTCACAGACTCGGAGAATGAAAATGAATGGAAGTGGCTGGATGGGACATCTCCAGACTACAAAAATTGGAAAGCTGGAC
AGCCGGATAACTGGGGTCATGGCCACGGGCCAGGAGAAGACTGTGCTGGGTTGATTTATGCTGGGCAGTGGAACGATTTC
CAGTGTGAAGACATCAATAACTTCATTTGCGAAAAAGACAGGGAGACAGTACTGTCATCTGCATTATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .38 RPM |
| SRP051959_skeletal_muscle | 12 .75 RPM |
| SRP051959_lymph_node | 6 .58 RPM |
| SRP051959_lung | 50 .27 RPM |
| SRP051959_liver | 1 .47 RPM |
| SRP051959_kidney | 10 .56 RPM |
| SRP051959_heart | 26 .56 RPM |
| SRP051959_colon | 10 .45 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000003364 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3363 | 90.27 | 79.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3473 | 85.76 | 79.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3628 | 85.26 | 79.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3630 | 85.74 | 65.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000146 retrocopies