Parental gene:

MAPK6, ENSCJAG00000000962

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:29187156..29251370(+)


>ENSCJAG00000000962
ATGGCAGAGAAATTTGAAAGTCTCATGAACATTCATGGTTTTGATCTGGGTTCTAGGTATATGGACTTAAAACCGTTGGG
TTGTGGAGGCAATGGCTTGGTTTTTTCTGCTGTAGACAATGACTGTGACAAAAGAGTAGCCATCAAGAAAATTGTCCTTA
CCGATCCCCAGAGTGTCAAACATGCTCTACGTGAAATCAAAATTATTAGAAGACTTGATCATGATAACATTGTGAAAGTG
TTTGAAATTCTTGGTCCCAGTGGAAGCCAGTTAACAGACGATGTGGGCTCTCTTACGGAGCTGAACAGTGTTTACATTGT
TCAGGAGTACATGGAGACAGACTTGGCTAATGTGCTGGAGCAGGGCCCTTTACTGGAAGAGCATGCCAGACTTTTCATGT
ATCAGCTGCTACGGGGGCTCAAGTATATTCACTCTGCAAATGTACTGCACAGAGATCTCAAACCAGCTAATCTTTTCATT
AATACTGAAGACTTGGTGCTGAAGATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATTATTCTCATAAGGGTCA
TCTTTCTGAAGGATTGGTTACTAAATGGTACAGATCTCCACGTCTTTTACTTTCTCCTAATAATTACACGAAAGCCATTG
ACATGTGGGCAGCAGGCTGCATCTTTGCTGAAATGCTGACTGGTAAAACCCTTTTTGCAGGTGCACATGAACTTGAACAG
ATGCAGCTGATTTTAGAATCTATTCCTGTTGTACATGAGGAAGATCGTCAGGAGCTTCTCAGCGTAATTCCAGTTTACAT
AAGAAATGACATGACTGAGCCACACAAACCTTTAACTCAGCTGCTTCCAGGAATTAGTAGAGAAGCACTGGATTTCCTGG
AACAAATTTTGACATTTAGCCCCATGGATCGGTTAACAGCAGAAGAAGCGCTCTCCCATCCTTACATGAGCATATATTCT
TTTCCAATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGATGAAGTTGATGATATTTTGCTTATGGATGAAAC
TCACAGTCACATTTATAACTGGGAAAGGTACCATGATTGTCAGTTTTCAGAGCATGATTGGCCTATACATAACAACTTTG
ATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTGTCTGATGTCACTGATGAAGAGGAAGTACAGGTTGATCCCCGAAAA
TATTTGGATGGAGATCGGGAAAAGTATCTGGAAGATCCTGCTTTTGATACCAATTACTCTACTGAGCCTTGTTGGCAGTA
CCCAGATCATCATGAAAACAAATACTGTGATCTGGAGTGTAGCCATACTTGTAACTACAAAACAAGGTCATCATCATATT
TAGATAACTTAGTCTGGAGAGAGAGTGAAGTTAACCATTACTATGAGCCCAAGCTTATTATAGATCTTTCCAATTGGAAA
GAACAAAGCAAAGAAAAATCTGATAAGAAAGGCAAATCAAAATGTGAAAGGAATGGATTGGTTAAAGCCCAGATAGCACT
AGAGGAAGCATCACAGCAACTGGCTGGAAAAGAAAGGGAAAAGAATCAGGGATTTGATTTTGATTCCTTTATTGCAGGAA
CTATTCAGCTTAGTTCCCAACATGAGCCTACTGATGTTGTTGATAAATTAAATGACTTGAATAGCTCAGTGTCCCAACTA
GAGTTGAAAAGTTTGATATCAAAGTCAGTAAGCCAAGAAAAACAGGAAAAAGGAATGGCAAATTTGGCTCAATTAGAAGC
CTTGTACCAGTCTTCTTGGGACAGTCAGTTTGTGAGTGGTCGGGAGGACTGTTTTTTCATAAATCAGTTTTGTGAGGTAA
GGAAGGATGAACAACTTGAGAAGGAAAACACTTACACTAGTTACCTGGACAAGTTCTTTAGCAGGAAAGAAGATACTGAA
ATGCTAGAAATGGAGCCCACAGAGGATGGGAAGCTTGGGGAGAGAGGAAATGAGGAAGGATTTCTGAACAACAGTGGGGA
GTTCCTCTTTAACAAGCAGCTCGAGTCCATAGGCATCCCGCAGTTTCACAGTCCAGTTGGGTCACCACTCAAGTCAATAC
AGGCCACCTTAACACCTTCTGCTATGAAATCTTCCCCTCAGATTCCTCACAAAACATACAGCAGCATTCTGAAACATCTG
AACTAA

Library Parental gene expression (RPM)
SRP051959_colon 54 .27 RPM
SRP051959_heart 17 .66 RPM
SRP051959_kidney 27 .95 RPM
SRP051959_liver 22 .53 RPM
SRP051959_lung 19 .26 RPM
SRP051959_lymph_node 18 .81 RPM
SRP051959_skeletal_muscle 15 .24 RPM
SRP051959_spleen 24 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000069956 ortholog_one2one 2 retrogenes
retro_hsap_1257, retro_hsap_2519,
Gorilla gorilla ENSGGOG00000004003 ortholog_one2one 1 retrogene
retro_ggor_1571,
Monodelphis domestica ENSMODG00000001962 possible_ortholog 2 retrogenes
retro_mdom_138, retro_mdom_63,
Nomascus leucogenys ENSNLEG00000006476 ortholog_one2one 2 retrogenes
retro_nleu_1441, retro_nleu_2095,
Otolemur garnettii ENSOGAG00000030786 ortholog_one2one 1 retrogene
retro_ogar_1827,
Pongo abelii ENSPPYG00000006482 ortholog_one2one 2 retrogenes
retro_pabe_1853, retro_pabe_3322,
Pan troglodytes ENSPTRG00000020224 ortholog_one2one 3 retrogenes
retro_ptro_1464, retro_ptro_2743, retro_ptro_3045,
Sarcophilus harrisii ENSSHAG00000017091 possible_ortholog 1 retrogene
retro_shar_445,
Tupaia belangeri ENSTBEG00000007876 ortholog_one2one 2 retrogenes
retro_tbel_1879, retro_tbel_2946,
Tursiops truncatus ENSTTRG00000016253 ortholog_one2one 2 retrogenes
retro_ttru_322, retro_ttru_75,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2633 89.09 61.86
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Download FASTA sequences of all ENSCJAG00000000962 retrocopies