Parental gene: | CCT2, ENSCJAG00000001715 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:59109056..59125257(+) |
>ENSCJAG00000001715
ATGGCGTCCCTTTCCCTTACACCTGTTAACATCTTCAAGGCAGGAGCTGATGAAGAGAGAGCAGAGACAGCTCGTCTGTC
TTCTTTTATTGGTGCCATCGCTATTGGAGACTTGGTAAAGAGCACCTTGGGACCCAAAGGCATGGACAAAATTCTTCTAA
GCAGTGGACGAGATGCCTCTCTTATGGTAACCAATGATGGTGCCACTATTCTAAAAAACATTGGTGTTGACAATCCAGCA
GCTAAAGTTTTAGTTGACATGTCAAGGGTTCAAGATGATGAAGTTGGTGATGGCACTACCTCTGTTACCGTTTTAGCAGC
AGAATTATTAAGGGAAGCAGAATCTTTAATTGCAAAAAAGATTCATCCACAGACCATCATAGCGGGTTGGAGAGAAGCCA
CAAAGGCAGCAAGAGAGGCTCTGTTGAGTTCTGCAGTCGATCATGGTTCTGATGAAGTTAAATTCCGTCAAGATTTAATG
AATATTGCGGGCACGACATTATCCTCAAAACTTCTTACTCATCACAAAGACCACTTTACTAAATTAGCTGTAGAAGCGGT
TCTCAGACTGAAAGGCTCTGGCAACCTGGAGGCAATTCATATTATCAAGAAGCTAGGAGGAAGTTTGGCAGATTCCTATT
TAGATGAAGGCTTTCTGTTGGATAAAAAAATTGGAGTAAATCAACCAAAACGAATTGAAAATGCTAAAATTCTTATTGCA
AATACTGGTATGGATACAGACAAAATAAAGATATTTGGTTCCCGGGTTAGAGTTGATTCTACAGCAAAGGTTGCAGAAAT
AGAACATGCGGAAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGAATAAATTGCTTCATTAACAGGC
AGTTAATTTATAATTATCCTGAACAGCTCTTCGGTGCTGCTGGTGTCATGGCTATTGAGCATGCAGATTTTGCAGGTGTG
GAACGCCTAGCTCTTGTCACAGGTGGTGAAATTGCCTCTACCTTTGATCACCCAGAACTGGTAAAGCTTGGAAGTTGCAA
ACTTATTGAGGAAGTCATGATTGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTGGTGAGGCTTGTACCATTG
TTTTGCGTGGTGCCACTCAGCAAATTTTAGATGAAGCTGAAAGATCTTTGCATGATGCTCTTTGTGTTCTTGCACAAACT
GTAAAGGATTCTAGAACAGTTTATGGAGGAGGCTGTTCGGAGATGTTGATGGCTCATGCTGTGACACAGCTTGCCAATAG
AACACCAGGCAAAGAAGCTGTTGCAATGGAGTCTTATGCTAAAGCACTGAGAATGTTGCCAACCATCATAGCTGACAATG
CAGGCTATGACAGTGCAGACCTAGTGGCACAGCTCAGAGCTGCTCACAGTGAAGGCAATACCACTGCTGGACTGGCAGAT
ATGAGGGAAGGCACTATTGGAGATATGGCTCTCCTAGGTATAACAGAAAGTTTTCAAGTAAAGCGTCAAGTTCTTCTAAG
TGCAGCTGAAGCAGCAGAGGTGATTCTGCGTGTGGACAACATCATCAAAGCGGCACCCAGGAAACGTGTCCCTGATCACC
ACCCATGTTAA
ATGGCGTCCCTTTCCCTTACACCTGTTAACATCTTCAAGGCAGGAGCTGATGAAGAGAGAGCAGAGACAGCTCGTCTGTC
TTCTTTTATTGGTGCCATCGCTATTGGAGACTTGGTAAAGAGCACCTTGGGACCCAAAGGCATGGACAAAATTCTTCTAA
GCAGTGGACGAGATGCCTCTCTTATGGTAACCAATGATGGTGCCACTATTCTAAAAAACATTGGTGTTGACAATCCAGCA
GCTAAAGTTTTAGTTGACATGTCAAGGGTTCAAGATGATGAAGTTGGTGATGGCACTACCTCTGTTACCGTTTTAGCAGC
AGAATTATTAAGGGAAGCAGAATCTTTAATTGCAAAAAAGATTCATCCACAGACCATCATAGCGGGTTGGAGAGAAGCCA
CAAAGGCAGCAAGAGAGGCTCTGTTGAGTTCTGCAGTCGATCATGGTTCTGATGAAGTTAAATTCCGTCAAGATTTAATG
AATATTGCGGGCACGACATTATCCTCAAAACTTCTTACTCATCACAAAGACCACTTTACTAAATTAGCTGTAGAAGCGGT
TCTCAGACTGAAAGGCTCTGGCAACCTGGAGGCAATTCATATTATCAAGAAGCTAGGAGGAAGTTTGGCAGATTCCTATT
TAGATGAAGGCTTTCTGTTGGATAAAAAAATTGGAGTAAATCAACCAAAACGAATTGAAAATGCTAAAATTCTTATTGCA
AATACTGGTATGGATACAGACAAAATAAAGATATTTGGTTCCCGGGTTAGAGTTGATTCTACAGCAAAGGTTGCAGAAAT
AGAACATGCGGAAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGAATAAATTGCTTCATTAACAGGC
AGTTAATTTATAATTATCCTGAACAGCTCTTCGGTGCTGCTGGTGTCATGGCTATTGAGCATGCAGATTTTGCAGGTGTG
GAACGCCTAGCTCTTGTCACAGGTGGTGAAATTGCCTCTACCTTTGATCACCCAGAACTGGTAAAGCTTGGAAGTTGCAA
ACTTATTGAGGAAGTCATGATTGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTGGTGAGGCTTGTACCATTG
TTTTGCGTGGTGCCACTCAGCAAATTTTAGATGAAGCTGAAAGATCTTTGCATGATGCTCTTTGTGTTCTTGCACAAACT
GTAAAGGATTCTAGAACAGTTTATGGAGGAGGCTGTTCGGAGATGTTGATGGCTCATGCTGTGACACAGCTTGCCAATAG
AACACCAGGCAAAGAAGCTGTTGCAATGGAGTCTTATGCTAAAGCACTGAGAATGTTGCCAACCATCATAGCTGACAATG
CAGGCTATGACAGTGCAGACCTAGTGGCACAGCTCAGAGCTGCTCACAGTGAAGGCAATACCACTGCTGGACTGGCAGAT
ATGAGGGAAGGCACTATTGGAGATATGGCTCTCCTAGGTATAACAGAAAGTTTTCAAGTAAAGCGTCAAGTTCTTCTAAG
TGCAGCTGAAGCAGCAGAGGTGATTCTGCGTGTGGACAACATCATCAAAGCGGCACCCAGGAAACGTGTCCCTGATCACC
ACCCATGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 31 .79 RPM |
| SRP051959_skeletal_muscle | 28 .78 RPM |
| SRP051959_lymph_node | 29 .13 RPM |
| SRP051959_lung | 29 .59 RPM |
| SRP051959_liver | 36 .15 RPM |
| SRP051959_kidney | 34 .88 RPM |
| SRP051959_heart | 34 .43 RPM |
| SRP051959_colon | 28 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000000432 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000006098 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000006688 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000008364 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1854 | 87.65 | 68.65 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2579 | 94.56 | 92.54 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001715 retrocopies