Parental gene: | ENSCJAG00000001993 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 3:39098685..39149204(-) |
>ENSCJAG00000001993
ATGTCAAAGAAAAAAGGATTAAGTGCAGAAGAAAAGAGAACTCGCATGATGGAAATATTTTTTGAAACAAAAGATGTATT
TCAATTAAAAGACTTGGAGAAGATTGCTCCCAAAGAGAAAGGCATTACTTCTATGTCAGTAAAAGAAGTCCTTCAAAGCT
TAGTTGATGATAGTATGGTTGACTGTGAGAGGATCGGAACTTCTAATTATTATTGGGCTTTTCCGAGTAAAGCTCTTCAT
GCAAGGAAACGTAAGTTGGAAGCTCTGGAATCTCAGTTGTCTGAGGGAAGCCAAAAGCATGCAAGCCTACAGAAAAGCAT
TGAAAAAGCTAAAATTGGCCGATGTGAAACGGAAGAGCGAACCATGCTAGCAAAAGAACTTTCTTCACTTCGAGACCAAA
GGGAACAGCTAAAGGCAGAAGTAGAAAAATACAAAGATTGTGACCCACAAGTCGTGGAAGAAATACGCCAAGTAAATAAA
GTAGCCAAAGAAGCTGCTAACAGATGGACTGATAACATATTTGCAATAAAATCTTGGGCCAAAAGAAAATTTGGGTTTGA
AGAAAATAAAATTGATAAAACTTTTGGAATTCCAGAAGACTTTGACTACATAGACTAA
ATGTCAAAGAAAAAAGGATTAAGTGCAGAAGAAAAGAGAACTCGCATGATGGAAATATTTTTTGAAACAAAAGATGTATT
TCAATTAAAAGACTTGGAGAAGATTGCTCCCAAAGAGAAAGGCATTACTTCTATGTCAGTAAAAGAAGTCCTTCAAAGCT
TAGTTGATGATAGTATGGTTGACTGTGAGAGGATCGGAACTTCTAATTATTATTGGGCTTTTCCGAGTAAAGCTCTTCAT
GCAAGGAAACGTAAGTTGGAAGCTCTGGAATCTCAGTTGTCTGAGGGAAGCCAAAAGCATGCAAGCCTACAGAAAAGCAT
TGAAAAAGCTAAAATTGGCCGATGTGAAACGGAAGAGCGAACCATGCTAGCAAAAGAACTTTCTTCACTTCGAGACCAAA
GGGAACAGCTAAAGGCAGAAGTAGAAAAATACAAAGATTGTGACCCACAAGTCGTGGAAGAAATACGCCAAGTAAATAAA
GTAGCCAAAGAAGCTGCTAACAGATGGACTGATAACATATTTGCAATAAAATCTTGGGCCAAAAGAAAATTTGGGTTTGA
AGAAAATAAAATTGATAAAACTTTTGGAATTCCAGAAGACTTTGACTACATAGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .76 RPM |
| SRP051959_skeletal_muscle | 0 .02 RPM |
| SRP051959_lymph_node | 1 .19 RPM |
| SRP051959_lung | 0 .31 RPM |
| SRP051959_liver | 0 .06 RPM |
| SRP051959_kidney | 0 .09 RPM |
| SRP051959_heart | 0 .11 RPM |
| SRP051959_colon | 1 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018446 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000004514 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000022084 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004937 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000033752 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005936 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004594 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015738 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000011001 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000004475 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1495 | 82.41 | 95.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1907 | 95.76 | 80.49 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2624 | 88.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2946 | 72.78 | 77.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3979 | 87.05 | 67.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001993 retrocopies